Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j18
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.27
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.3
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.3
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 3.3
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 27 3.3
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.3
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 4.3
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.7
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 5.7
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 5.7
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 7.6
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 7.6
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 10.0
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 10.0
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 10.0
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 25 10.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 10.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 10.0
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 458 LDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLK 637
LD + ++ RT ++ + + + YSS H + N + TIKE N+I+ + L
Sbjct: 481 LDSQNFIASFRTFTLAIKISLLTNKVYDMWYSSLHGKANLKAATIKEIVNEIEAWRQQLS 540
Query: 638 RKLE 649
LE
Sbjct: 541 PDLE 544
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 338 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRI-RTDSVQEDV 514
+R N +SA++ G+E D + N V + D+K+ R+ + S ++DV
Sbjct: 1831 KRHNIDSANLSR--GTERDED---IPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDV 1885
Query: 515 LRIQDDEETEEYSSK 559
L D+ E E+ SSK
Sbjct: 1886 LNKIDESEIEQASSK 1900
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 347 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 526
+ ESA +E S I ++ G++ PQK K +K + +V ED L +
Sbjct: 127 DSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQGSKTEESPNVDEDELESE 186
Query: 527 DDEET 541
+E+T
Sbjct: 187 PEEKT 191
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 404 SSLRNVDGTKGVDPQKIKLD-DKLELSRIR--TDSVQEDVLRIQDDEETEEYSSKHVRPN 574
+ R G K DP ++ L +KL +S ++ T+ + VL + E T S+ RP
Sbjct: 92 TQFREAMGQKLNDPYQVLLRRNKLPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPK 151
Query: 575 TQTVTIKESTNQIQTRKTSLKRKLEEESAA 664
++ E + ++ + + K+EE A
Sbjct: 152 ISFDSVAELAKESDEKQNAYEEKIEERILA 181
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 476 LSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 655
LS I DS +D+ ++++ EEY+ V P V KES + R L +L E
Sbjct: 335 LSPILMDSFGDDLQKLKETYGEEEYNLYLVDPYRYRVKRKESFYDLAVRLEPLILELGRE 394
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 509 DVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 655
DV+ I+ D + SSK RPN ++++ ++ R S+ K EE+
Sbjct: 97 DVVSIRQDFQ----SSKKKRPNETDISVEGVVTRVHERHISVALKSEED 141
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.3
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +2
Query: 353 ESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDD 532
+S+S E++S SED NDSSS + D + S + S D
Sbjct: 113 DSSSSESESSSED-NDSSS-SSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170
Query: 533 EETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEESAAGT 670
E+E S + ++ + + ES+++ +S E S+ G+
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGS 216
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 347 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR-I 523
+EE +E + +EDI + +N+D + ++ LD E +I T + + I
Sbjct: 133 DEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATGNPI 192
Query: 524 QDDEETEEYSS 556
+D E++ S
Sbjct: 193 EDSSESDSEES 203
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 386 EDINDSSSLRNVDGTKGVDPQKIKLDDK-LELSRIRTDSVQEDVLRIQDDEETEEYSSKH 562
++I+ SL N+D DP + K++ K L SR++ SV++ LRI T +YSS
Sbjct: 17 KEISSFGSLTNID--LHTDPYE-KVEAKALSRSRLKNQSVKKTDLRI-----TNDYSSLF 68
Query: 563 VRPNTQTVTIKE 598
V + TI +
Sbjct: 69 VSIENKKNTIPD 80
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +2
Query: 362 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 541
S+ NK + + +NV+ +PQ+ K + LE+ + + + + +
Sbjct: 69 SVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINS 128
Query: 542 EEYSSKHVRPNTQT 583
SSK TQ+
Sbjct: 129 SSSSSKECSTQTQS 142
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 491 TDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR--KLEEE 655
T + +ED + +D+E + SK +R + Q V K + + R + LK+ KLE+E
Sbjct: 48 TSNEEEDAISDMEDKEDVSFGSKILRVSHQEVE-KPTLSATVGRVSFLKKMPKLEDE 103
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 377 SGSEDINDSSSLRNVDGTK-GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEY 550
S S+ + S + V T+ K + + + + + S+++D+L+ ++DEE EE+
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTEFDFQTANQKFQSMKDDLLKGKNDEEAEEF 336
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 350 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 529
E ++S+EN S DSSS + + ++P+ + D+ + + + V++D D
Sbjct: 88 ELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDE--DDKHVTVEIVEDD-----D 140
Query: 530 DEE 538
DEE
Sbjct: 141 DEE 143
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 554 SKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEESA 661
+KH+RPN T + + + + + +K+E SA
Sbjct: 317 TKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSA 352
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 335 LERRNEESASIENKSGSEDINDSSSLRNV 421
+E + + S++NK+ +ED+ D++ +R +
Sbjct: 172 VETSHYNAQSVKNKTSNEDLFDTNEMRKI 200
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 350 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLE 475
E++A + +N++SSL NVD +D ++ D E
Sbjct: 291 EKAAPVPKNPSVSYLNEASSLENVDDMDDIDVKEPLFSDNDE 332
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 242 DPNKKESRGRRLFKKV 289
DPNK +SRG+RL K +
Sbjct: 49 DPNKVKSRGKRLRKSM 64
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 554 SKHVRPNTQTVTIKESTNQIQTRK 625
S H++P T TV I++S N ++ K
Sbjct: 185 SSHIQPETATVFIEQSLNFLEGPK 208
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/87 (20%), Positives = 41/87 (47%)
Frame = +2
Query: 338 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 517
E R +I++ SG+ + S + KG+ + + + + ++ + ++D
Sbjct: 241 EERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFEDDYS 300
Query: 518 RIQDDEETEEYSSKHVRPNTQTVTIKE 598
RIQ+DEE + H+ ++ T++E
Sbjct: 301 RIQNDEELLKVGMIHLN-KSENRTVEE 326
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 389 LQSHFYFQLMHFLRFFVLV*NFYRHRWIYFCDELL-F*IAFFPSILF 252
++SH +F L+ F+ FF+L ++ L+ F FF + F
Sbjct: 143 IKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLSF 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,260
Number of Sequences: 5004
Number of extensions: 47634
Number of successful extensions: 194
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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