Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j18
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 33 0.17
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 33 0.17
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 33 0.17
At2g22795.1 68415.m02704 expressed protein 33 0.23
At5g60030.1 68418.m07527 expressed protein 32 0.30
At1g18090.2 68414.m02241 exonuclease, putative similar to Swiss-... 32 0.30
At1g18090.1 68414.m02240 exonuclease, putative similar to Swiss-... 32 0.30
At4g10670.1 68417.m01743 transcription elongation factor-related... 31 0.53
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 31 0.93
At5g66700.1 68418.m08408 homeobox-leucine zipper family protein ... 30 1.2
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 30 1.2
At3g02400.1 68416.m00227 forkhead-associated domain-containing p... 30 1.2
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 30 1.6
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 29 2.1
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 29 3.8
At2g47820.1 68415.m05968 expressed protein 29 3.8
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 5.0
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont... 28 5.0
At3g44690.1 68416.m04806 expressed protein 28 5.0
At1g13340.1 68414.m01548 expressed protein contains Pfam profile... 28 5.0
At1g09720.1 68414.m01091 kinase interacting family protein simil... 28 5.0
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 28 6.6
At5g02390.1 68418.m00162 expressed protein ; expression supporte... 28 6.6
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 28 6.6
At5g55580.1 68418.m06929 mitochondrial transcription termination... 27 8.7
At5g13850.1 68418.m01619 nascent polypeptide-associated complex ... 27 8.7
At3g06160.1 68416.m00708 transcriptional factor B3 family protei... 27 8.7
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ... 27 8.7
At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote... 27 8.7
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +2
Query: 362 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKL-DDKLELSRIRTDSVQEDVLRIQD--D 532
S+EN + S + ++ +++ +K VD KL DDK+ + R DS +E+ D
Sbjct: 203 SMENVNSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLIS 262
Query: 533 EETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR 640
E+T+ T+ + + KTS K+
Sbjct: 263 EKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKK 298
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +2
Query: 362 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKL-DDKLELSRIRTDSVQEDVLRIQD--D 532
S+EN + S + ++ +++ +K VD KL DDK+ + R DS +E+ D
Sbjct: 203 SMENVNSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLIS 262
Query: 533 EETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR 640
E+T+ T+ + + KTS K+
Sbjct: 263 EKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKK 298
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +2
Query: 362 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKL-DDKLELSRIRTDSVQEDVLRIQD--D 532
S+EN + S + ++ +++ +K VD KL DDK+ + R DS +E+ D
Sbjct: 203 SMENVNSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLIS 262
Query: 533 EETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR 640
E+T+ T+ + + KTS K+
Sbjct: 263 EKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKK 298
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/109 (22%), Positives = 51/109 (46%)
Frame = +2
Query: 338 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 517
+R E E+ S E ++ + + + + + K +K+E S + +ED
Sbjct: 449 DRETETKEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETKEKEDET 508
Query: 518 RIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEESAA 664
+ +++ ++E K T+T +ES++Q +T K K+E+E A+
Sbjct: 509 KEKEESSSQE---KTEEKETETKDNEESSSQEET-KDKENEKIEKEEAS 553
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 32.3 bits (70), Expect = 0.30
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 341 RRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR 520
++N + ++ K ED S+ ++ K D K +KLE + + +E +
Sbjct: 191 KKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEKLEDEQRSGERKKEKKKK 250
Query: 521 IQDDEE--TEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEE 652
+ DEE +EE SK R + + + +E RK+ KRKL+E
Sbjct: 251 RKSDEEIVSEERKSKKKRKSDEEMGSEE-------RKSKKKRKLKE 289
>At1g18090.2 68414.m02241 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/87 (21%), Positives = 37/87 (42%)
Frame = +2
Query: 383 SEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKH 562
S + D +D +K +D IK D + + ++ + D+ +QD +
Sbjct: 482 SHEHEDQKECVTIDLSK-LDAAGIKQDSEKNRVKETFETTEVDLAEVQDHVNMTTKRVRG 540
Query: 563 VRPNTQTVTIKESTNQIQTRKTSLKRK 643
+P T+ +K S + KT +K+K
Sbjct: 541 TKPRTENFKVKTSCKSSENNKTIIKKK 567
>At1g18090.1 68414.m02240 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/87 (21%), Positives = 37/87 (42%)
Frame = +2
Query: 383 SEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKH 562
S + D +D +K +D IK D + + ++ + D+ +QD +
Sbjct: 482 SHEHEDQKECVTIDLSK-LDAAGIKQDSEKNRVKETFETTEVDLAEVQDHVNMTTKRVRG 540
Query: 563 VRPNTQTVTIKESTNQIQTRKTSLKRK 643
+P T+ +K S + KT +K+K
Sbjct: 541 TKPRTENFKVKTSCKSSENNKTIIKKK 567
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = +2
Query: 383 SEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKH 562
++D +DS S + D KG +P ++++ + E D E +++EE E S+
Sbjct: 351 NQDGSDSESGGSEDSDKGYEPSDVEVESESE------DETSESESDDEEEEEDSEQESEE 404
Query: 563 VRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 655
+ T +E+TN R+ ++ EEE
Sbjct: 405 EKGKTWAELEREATN--ADREHGVESDSEEE 433
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 30.7 bits (66), Expect = 0.93
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +2
Query: 341 RRNEES-ASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 517
R N++S A +++S E +D + + + + + + DK E + +E+V
Sbjct: 516 RTNKKSVAHSDDESEEEKEDDEEEEKEQEVEEEEEENENGIPDKSEDEAPQLSESEENV- 574
Query: 518 RIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRK 643
+ +EE+EE + K R + + KES + +++KT++ K
Sbjct: 575 --ESEEESEEETKKKKRGSRTSSDKKESAGKSRSKKTAVPTK 614
>At5g66700.1 68418.m08408 homeobox-leucine zipper family protein
similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP
protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains
Pfam PF00046: Homeobox domain
Length = 228
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/102 (17%), Positives = 48/102 (47%)
Frame = +2
Query: 347 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 526
+E+ +E G+E +S + G G+DP+++ + + +R + ++E+ +++
Sbjct: 77 DEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLK 136
Query: 527 DDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEE 652
+ + + +Q + + E ++ Q+ L +LEE
Sbjct: 137 NHHDNVVLGQCQL--ESQILKLTEQLSEAQSEIRKLSERLEE 176
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 341 RRNEESASIENKSGSEDI--NDSSSLRNVDGTKGVDPQKIKLDDKLELS-RIRTDSVQED 511
RR E+A + + +E + N +R + K + Q++K DD + R+ +DSV ED
Sbjct: 92 RRQRENAQTKIRKTAEKLLLNRLKDIRLKEQAKDIKNQRLKQDDSDRVKKRVSSDSV-ED 150
Query: 512 VLRIQDDEE 538
LR+ +E+
Sbjct: 151 NLRVPVEED 159
>At3g02400.1 68416.m00227 forkhead-associated domain-containing
protein / FHA domain-containing protein / AT hook
motif-containing protein contains Pfam profiles PF00498:
FHA domain, PF02178: AT hook motif
Length = 585
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +2
Query: 347 NEESASIENKSG-SEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIR-TDSVQEDVLR 520
++E+ + E SG S+DI D + DG+K V+ +I+L K + ++ TD +
Sbjct: 362 DKENEAQEGCSGRSDDICDQEDEKECDGSKRVEQVEIELRKKSTVEGLKCTDKEDGETEN 421
Query: 521 IQD-DEETEEYSSKHVRPNTQTVTIKE 598
QD + E E + K + + KE
Sbjct: 422 SQDIERERENENEKEAQEGCSERSDKE 448
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 491 TDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSL 634
T++V E +++ EE S PNT+T T E+T+Q T S+
Sbjct: 1229 TETVSEPPPVEKEETSLEEKSDPSSTPNTETATSTENTSQTTTTPESV 1276
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +2
Query: 443 PQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTR 622
P+K+ L+ K E+++ R ++ + + Q E+ E+Y + P ++ V K+ + + +
Sbjct: 2 PKKMGLNSKAEVAKSRKNAAEAEQKDRQTREKEEQYWREAEGPKSKAV--KKREEEAEKK 59
Query: 623 KTSLKRKLEEESAA 664
+ +KLE + A
Sbjct: 60 AETAAKKLEAKRLA 73
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 503 QEDVLRIQDDEETEEYSSKHVRPN---TQTVTIKESTNQIQTRKTSLKRKLEEESAAG 667
+E +L++++DEE + V PN TQ + E Q Q L K+E+ + G
Sbjct: 71 EEQLLKLREDEEKANNAGSAVAPNLNETQFTKLDELLTQTQLYSEFLLEKMEDITING 128
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 28.7 bits (61), Expect = 3.8
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Frame = +2
Query: 338 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIR-------TD 496
E R E +++ S S DSS RN+D + + + D L +S+I TD
Sbjct: 621 EERINEDKTLKLSSTSSFARDSSCRRNIDREISPERSESREDFDLNVSQISLEREADGTD 680
Query: 497 SVQEDVLRIQDDEETEEYS-----SKHVRPNTQTVTIKESTNQIQ-TRKTSLKRKLEEES 658
+V DV++ + E+ S K +P VT + Q TR L K E
Sbjct: 681 TVMADVVQNSESSCAEQSSVQVDVEKQCKPQELQVTADLLPERRQSTRTRPLTTKALEAF 740
Query: 659 AAG 667
A G
Sbjct: 741 AFG 743
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 407 SLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQED----VLRIQDDEETEEYSSKHVRPN 574
SL +V +DP ++LD+ LE + + ++ D + D + K+++P
Sbjct: 388 SLTDVLNKVALDPTLLELDEDLERKGSKEEVIKNDPPTNLEEFDDSSPNSKKKKKYLQPR 447
Query: 575 TQTVTIKE 598
++T I+E
Sbjct: 448 SKTRKIQE 455
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +2
Query: 419 VDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKE 598
+D KG QK+KL D E + S ++D R +EE E S + +K
Sbjct: 26 LDSKKGKKEQKLKLSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKVKL 85
Query: 599 STNQIQ 616
++
Sbjct: 86 GVEDVE 91
>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor (Dentin phosphophoryn DPP,
Dentin sialoprotein DSP) [Homo sapiens]
Length = 792
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 461 DDKLELSRIRTDSVQEDVLRI-----QDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRK 625
+DK + + T +++D+ + Q+DEE E +KH +++ + E + ++ +
Sbjct: 162 EDKADQEKETTKKIEKDINEMEVDSKQEDEENETEDAKH----SESAQVPEESTKLSKEE 217
Query: 626 TSLKRKLEEESAA 664
T + + EE A
Sbjct: 218 TDEENQKEENGVA 230
>At3g44690.1 68416.m04806 expressed protein
Length = 1176
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 389 DINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVR 568
D+N S +L + + +KG+ + L+DK E +Q + R+ +D ET Y H
Sbjct: 591 DVNKSDTLEDREDSKGLRYRGGSLNDKKEA------YMQCERQRLLNDYETNSYGMMHPH 644
Query: 569 PN-TQTVTIKESTNQIQTRKTSLKRKLE 649
N + T+ E + R SL K E
Sbjct: 645 VNKSDTLVDHEDGRGRRYRGVSLNDKKE 672
>At1g13340.1 68414.m01548 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 409
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/91 (19%), Positives = 41/91 (45%)
Frame = +2
Query: 368 ENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEE 547
ENK ++ + +G + K + D ++ + S +ED +++ + +
Sbjct: 284 ENKESEQEQEGNDDSSEGEGDV-MSESKRSMSDSEDIIDVPVMSFREDPVKLLEKDTIIY 342
Query: 548 YSSKHVRPNTQTVTIKESTNQIQTRKTSLKR 640
S + +P+ +T+TI +S ++ Q R R
Sbjct: 343 DSEEETQPSVETITISKSKDE-QNRMVGSNR 372
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 446 QKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQ 610
Q++K+D+ +E + + +QE+ D + E K+ + + IK+S +Q
Sbjct: 440 QEVKMDEDVEGDGLNPEDIQEEDTVEDSDSISNEREIKNAEEIKEAMVIKQSRDQ 494
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +2
Query: 344 RNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKL-----DDKLELSRIRTDSVQE 508
R S E+ S ED+ND S + D +K + K K+ DD++ +SR+ +
Sbjct: 406 RKMNSTKDESSSDEEDLNDGS---DQDTSKLIAEAKEKILKTVDDDEVPISRLMSLPFMA 462
Query: 509 DVLRIQDDEETEE--YSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 655
++ +++E EE + + T K+STN + R + E E
Sbjct: 463 RAVKKKNEEAKEEGKRDIEELEKFGGAETSKKSTNVVGRRVFGAEAPKESE 513
>At5g02390.1 68418.m00162 expressed protein ; expression supported
by MPSS
Length = 835
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 434 GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQI 613
G+ KIKL+DK ++ ++ ++ ++ + E + K P ++ K+ ++
Sbjct: 68 GIPVPKIKLEDKTDVESVQRPKKPSSAVKSKESSNSGEKTKKKHNPEEKS---KKLNSEE 124
Query: 614 QTRKT--SLKRKLE 649
++RKT +KR ++
Sbjct: 125 RSRKTHSEIKRSVK 138
>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
family protein low similarity to RNF6 protein [Mus
musculus] GI:20530241; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 379
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 350 EESASIENKSGSEDINDSSSLRNVD 424
E+S++ E+ SGSED +D S+ N D
Sbjct: 151 EDSSNHESLSGSEDESDGYSINNTD 175
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +2
Query: 386 EDINDSSSLRNVDGTKGVDPQK----IKLDDKLELSRIRTDSVQEDVLRIQDDEETEEYS 553
E + SS L G + P+K + DD++E R +D + DD E+ S
Sbjct: 307 ESLVPSSMLSPTVGVPDIVPKKRNEILDFDDEVEEEIYRASESLDDAMGDSDDGESHHTS 366
Query: 554 SKHVRPNT 577
K +R T
Sbjct: 367 RKRLRKKT 374
>At5g55580.1 68418.m06929 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 496
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/97 (23%), Positives = 43/97 (44%)
Frame = +2
Query: 362 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 541
S E+ +D +D L N D + + +K K K I SV++ +++ ++ E
Sbjct: 75 SDEDDDDDDDDDDDDWLLNDDFAEVTEYEKKK--PKSHKQTIAKKSVKKGIVKPEESETD 132
Query: 542 EEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEE 652
E+ + PN + KES K S ++ +E+
Sbjct: 133 EDDLDLGISPNATSEKKKESWRLDGRGKMSSRKYVEK 169
>At5g13850.1 68418.m01619 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to alpha-NAC,
non-muscle form [Mus musculus] GI:1666690; contains Pfam
profile PF01849: NAC domain
Length = 159
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 446 QKIKLDDKLELSRIRTD--SVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQT 619
QK++L KLE +I D V++D +DD E ++ + H K+S ++ ++
Sbjct: 5 QKVELAAKLEEQKIDLDKPEVEDDDDNDEDDSEDDDEAEGH--DGEAGGRSKQSRSEKKS 62
Query: 620 RKTSLK 637
RK LK
Sbjct: 63 RKAMLK 68
>At3g06160.1 68416.m00708 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 330
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +2
Query: 386 EDINDSSSLRNVD--GTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETE-EYSS 556
E+I+D + NV V + D S + S+ D L + E++ EYS
Sbjct: 128 EEISDDTEDDNVSLHSPSNVSLDSLSNDSHHSTSNVSLRSLSNDSLHGDAEIESDSEYSP 187
Query: 557 KHVRPNTQTVTIKESTNQIQTRKTSLKRKLEE 652
+++ + +V E N +R+ S KRK E
Sbjct: 188 ENLPSASISVESVEVVNPTTSRQRSYKRKTIE 219
>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
oxygenase 2 [Arabidopsis thaliana]
gi|4530595|gb|AAD22109
Length = 354
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 467 KLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQ 580
KL+LS +TD+ +E+ +DD++ +E + +P+ +
Sbjct: 94 KLDLSEDKTDTEKEEEEEEEDDDDDDEVKEETWKPSKE 131
>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas putida] GI:2822275; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 469
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -2
Query: 578 AYWVEHVLKSTLRFL---HHL-ECVTRLLGRNR 492
A W EH+ ++ L HHL E +TRLL RNR
Sbjct: 323 ASWYEHISRTVSLVLCKNHHLLEFLTRLLTRNR 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,440
Number of Sequences: 28952
Number of extensions: 233018
Number of successful extensions: 840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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