Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j17
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   3.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.5  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   4.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.8  

>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 351 KRNKISDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRK 485
           K +K+SD+ KSK       ++N           D + KE   S K
Sbjct: 218 KEDKVSDRKKSKKKPKKTPVSNSTASQASENASDKKTKEKKSSGK 262


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 532 QLINPFRLSSRIRVTSL-RDLVLSLFSLSPHALPSFLTSSLLMSLPPIEY 386
           +++  F  S  +  ++L R+LVL +    P    SF+  + L S P + Y
Sbjct: 259 RVLQSFVFSLHVHTSTLQRELVLKILKACPDITASFIERNSLTSEPVLSY 308


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 99  ELLAEYTITMGKLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHN------ 260
           +L  E  +   + KE+C+ AK++   +HN      R      Q +NK ++ E +      
Sbjct: 4   DLREEKELAQQRFKEICKHAKIV--DTHNDFPYLLRV-----QLRNKLQLAEFDFENGLT 56

Query: 261 SHTNRTETKQGK 296
           SHT+  + +QG+
Sbjct: 57  SHTDLVKMRQGQ 68


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 402 KDINNEEVKNDGSACGDNENKESTKSRKDVTRILLDNLKGLINCLIQNYLLENGANNQRK 581
           ++IN+ +++N          KEST S+K+V    L N K  ++  +Q  LLE    ++  
Sbjct: 720 REINDLQIQN-AEMKEQVYEKESTISQKEVEITSLRNEKDRLSTRLQQVLLELEKQHETN 778

Query: 582 ATVLD 596
              +D
Sbjct: 779 EEAMD 783


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 119  CIFC*QFVYYFISHCISYTGRFVNNVF 39
            C F  +F+YYF+    S +G + N++F
Sbjct: 1119 CCFL-RFMYYFLPTVFSLSGSYWNSIF 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,242
Number of Sequences: 5004
Number of extensions: 47016
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)