Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j17
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 35 0.071
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176... 33 0.22
03_01_0380 + 2955102-2955357,2955468-2956189 31 0.87
09_01_0128 + 1932721-1935181,1936099-1936256 30 1.5
03_06_0195 + 32256771-32258792 30 2.0
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 29 4.7
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 29 4.7
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 4.7
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 28 6.2
05_04_0084 - 17788077-17789240 28 6.2
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216... 28 8.1
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 28 8.1
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 34.7 bits (76), Expect = 0.071
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 135 LKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTNRTETKQGKRDFS-- 308
LK D ++ ++ T ++ + +EH+S T+ + + DF
Sbjct: 240 LKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNR 299
Query: 309 IETEICILRRHYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRK 485
+ ++I RR G+ R+ + K K K++ +D DNE+ + TKSRK
Sbjct: 300 MRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDND--DDNEDHQLTKSRK 356
>12_02_0967 -
24916352-24916402,24916662-24916717,24917602-24917685,
24917751-24918251,24918520-24919207
Length = 459
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 429 NDGSACGDNENKESTKSRKDVTRILLDNLKGLI-NCLIQNYLLENGANNQRKATVLDSI 602
+ S C D++ ++TK RK+++R L + L+ NC + L G N K V+ +
Sbjct: 354 DSSSICSDDDRVKTTKERKEMSRQLSSYIIYLVFNCGVMCLLASQGNNPDEKVAVVTKL 412
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 31.1 bits (67), Expect = 0.87
Identities = 26/129 (20%), Positives = 53/129 (41%)
Frame = +3
Query: 93 IDELLAEYTITMGKLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTN 272
I L A +T+++G++ E ++ S NT + +Y Y EH ++
Sbjct: 55 IRPLSANWTLSLGEIPEGSSSLLPPFEISANTKIVKD-VDGPSKKYIGPYTKKEHGTYLA 113
Query: 273 RTETKQGKRDFSIETEICILRRHYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGSACGD 452
+ ++ R S + ++R H K+ K + + +NEE DG +
Sbjct: 114 VQQGRKQNRILSALGQDMMVRVHPDLKKKKKKNSNINPKDAASSSSDNEENSLDGESDSS 173
Query: 453 NENKESTKS 479
+E+ + + S
Sbjct: 174 DESSDDSGS 182
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +3
Query: 210 CSGFSQYQNKYEIIEHNS-HTNRTETKQGKRDFSIETEICILRRHYGNKRNKISDKTKSK 386
CSG + Q + I+ NS T + +R + E L RH G +K ++ K
Sbjct: 337 CSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFLDRHIGRGEDKQEKRSTLK 396
Query: 387 YSIGG-------KDINNEEVKNDGSACGDN 455
+I G KD+N +K+ CGD+
Sbjct: 397 PTIHGRDKHKNHKDVNKRAMKSVKFVCGDD 426
>03_06_0195 + 32256771-32258792
Length = 673
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 366 SDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRKD 488
++ T+S + D ++E + +DGS C D E+K T++ D
Sbjct: 224 TESTESSHDEDDLDDDDESLDDDGSECFDEEDKIGTENPDD 264
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 273 RTETKQGKRDFSIETEICILRRHYGN 350
+TE+KQG R+F E EI I R H+ N
Sbjct: 258 KTESKQGDREFRAEVEI-ITRVHHRN 282
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 525 INCLIQNYLLENGANNQRK-ATVLDSIFHQKEVHVNEIASCSTYILNKSNTDPANKNK 695
++ LI+N L N +R+ + + S+FH+ E + + SCS I ++++T +N +K
Sbjct: 113 LSFLIRNKSLFGNPNMRREEGSDMHSLFHRSEKKKSTLPSCS-IITDEASTSTSNHSK 169
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 357 NKISDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRKDVTRI 500
+ S+ K Y G KD+N + V+++GS + + K+ SRK TRI
Sbjct: 1536 DSFSEPLKKLY--GSKDVNGKGVRSNGSETSNRQPKDKGFSRK--TRI 1579
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +3
Query: 168 YKKSHNTMTTQSRTCSGFSQYQNKYEII-EHNSHTNRTETKQGKRDFSIETEICILRR-- 338
++K T S T + S +YE I E+N+ + K +RDF + I+ +
Sbjct: 435 HQKLGGLKETISATEAAKSHALKEYENIKENNTIEIKRFDKDRRRDFVQMLKGFIVNQVS 494
Query: 339 ---HYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGS 440
HY N K++D+TK K + +++ +N S
Sbjct: 495 YSDHYANMWAKVADETKVKLELSAAKMSHAPCRNAAS 531
>05_04_0084 - 17788077-17789240
Length = 387
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 372 KTKSKYSIGGKDINNEEVKNDGSACG---DNENKESTKSRKD 488
+ K K GKD+ + + DG G D E K+ KS+K+
Sbjct: 197 REKGKKGKKGKDVGKKRKREDGGGGGGAQDGEGKDGKKSKKE 238
>08_02_1152 +
24720397-24720636,24720739-24720951,24721617-24721697,
24721781-24721867,24721970-24722065,24722179-24722232,
24722326-24723375,24723468-24723507,24723551-24723756
Length = 688
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 510 NLKGLINCLIQNYLLENGANNQRKATVLDSIFHQKEVHVNEIASCSTYILNKSNTDP 680
N KGL + N+L+ + VL+ I ++V +EI TY++ K N DP
Sbjct: 618 NYKGLQKSTVTNFLIFFASLKTAAMEVLELIGFCEDVVSDEIGRAETYLVLKRN-DP 673
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 561 GANNQRK--ATVLDSIFHQKEVHVNEIASCSTYILNKSNTDPANKNK 695
G N RK +V S+FH+ E + +A+C T I ++++T + ++K
Sbjct: 128 GNPNMRKEDGSVAHSMFHRSEKRKSTLAACGT-ITDEASTSTSKRSK 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,415
Number of Sequences: 37544
Number of extensions: 237117
Number of successful extensions: 764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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