Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j17
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    33   0.15 
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical...    31   1.0  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   3.2  
Z68760-5|CAE17823.1|  161|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    29   4.2  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    29   4.2  
AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    28   7.3  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = +3

Query: 369 DKTKSKYSIGGKDI--NNEEVKNDGSACGDNEN--KESTKSRKDVTRILLDNLKGLINCL 536
           +K   KY+IG KD+  N   +K D       E   +   K   +V +I  D+       L
Sbjct: 140 NKEDKKYTIGNKDVSFNQNIIKIDSDEYDATEGLMELLIKKSPNVNKIQKDDTSNYQKIL 199

Query: 537 IQNYLLENGANNQRKATVLDSIFHQKEVHVNEIASCSTYILNKSNT 674
           + +  L NG +   K    DS    K + VN   + +T   N +NT
Sbjct: 200 VCSNALYNGFDKTTKKYNSDSSEKWKFIKVNYFVTKTTTTNNATNT 245


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
 Frame = +3

Query: 69   RNAM*NKIIDELLAEYTITMGKLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEI 248
            + AM    + EL   +   + ++++  ED K    K  N  +TQ      F Q ++  + 
Sbjct: 1103 KEAMMADCVKELKDSHKERLKEMEQKVEDVKRKNSKLENENSTQKSQIETF-QRESSVDS 1161

Query: 249  IEHNSHTNRTETKQGKRDF-SIETEICILRRHYGNKRNKISDKTKSKYSIGGKDINNEEV 425
                S + R  T   +    SI +   I     G++++ ISD T S YS+  +D   +  
Sbjct: 1162 DYGRSSSGRLSTLGRQYSLTSIGSFSSIRTVGLGSRKDSISDMTSSMYSLRRRDSTYDMT 1221

Query: 426  KNDGSACGDNENKESTKSRKDVTRIL-LDNLKGLINCLIQ 542
                S  G   +  +++  +   RIL L+  K  IN  +Q
Sbjct: 1222 ---SSTIGLQRSPSTSQVMEKERRILELEKEKAAINTDLQ 1258


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 144 VCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTN 272
           V ED K  +   H T+      CS  +  +NKYE+   N+HT+
Sbjct: 710 VDEDGKT-FDADHPTVECYQIDCSNKTPVENKYELTPDNNHTS 751


>AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical
           protein D1007.16 protein.
          Length = 251

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
 Frame = +3

Query: 237 KYEIIEHNSHTNRTETKQGKRDFSIETEICILRRHYGNKRNKIS---DKTKSKYSIGGKD 407
           + E I  N +  +T       + +++  I  LR    N+R+  S   +K K +  +  +D
Sbjct: 100 RLEKITSNINVKKTRDLDQGTELALKRGIERLRTSSNNQRSGPSSPEEKAKIQKQMQ-RD 158

Query: 408 INNEEVKNDGSACGDNENKESTKSRKDVTRILLDNLK 518
            ++    +DGS+  D  N +S+    +  +ILL+ +K
Sbjct: 159 TSDSSSDSDGSSDSDKSNGDSSDDEDESEKILLEEMK 195


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans homeobox
            protein 44,isoform a protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 20   LEFIFFKTHYSQNVLCKKCNVK*N-NRRTASRIYNNYGQIKRSM*RRKGHIQEIS*HNDD 196
            L F+F    +  N LC++ ++K + + RT    ++N+ + +     ++G +   +  N  
Sbjct: 1118 LRFVFVNEQHPSNELCEQISLKLDMSLRTVQNWFHNH-RTRSKAREKEGKVYSDALPNGT 1176

Query: 197  AVQNLLW 217
            AV++L W
Sbjct: 1177 AVKSLTW 1183


>Z68760-5|CAE17823.1|  161|Caenorhabditis elegans Hypothetical
           protein F36H1.10 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 295 LPCLVSVRLVCELCSIISYLFWYC 224
           L C ++VR+   +C II  LFW C
Sbjct: 5   LCCHINVRIAYTICGIIIGLFWAC 28


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 29/43 (67%)
 Frame = +3

Query: 132 KLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHN 260
           KL+   +D+K + K++HNT++T+S + SG  + + + E ++ N
Sbjct: 76  KLRSASKDSKSLSKETHNTISTRS-SSSGTPRKKMEPEDVKPN 117


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 29/43 (67%)
 Frame = +3

Query: 132 KLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHN 260
           KL+   +D+K + K++HNT++T+S + SG  + + + E ++ N
Sbjct: 76  KLRSASKDSKSLSKETHNTISTRS-SSSGTPRKKMEPEDVKPN 117


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 29/43 (67%)
 Frame = +3

Query: 132 KLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHN 260
           KL+   +D+K + K++HNT++T+S + SG  + + + E ++ N
Sbjct: 76  KLRSASKDSKSLSKETHNTISTRS-SSSGTPRKKMEPEDVKPN 117


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 29/43 (67%)
 Frame = +3

Query: 132 KLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHN 260
           KL+   +D+K + K++HNT++T+S + SG  + + + E ++ N
Sbjct: 76  KLRSASKDSKSLSKETHNTISTRS-SSSGTPRKKMEPEDVKPN 117


>AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical
           protein Y50D4B.4 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +3

Query: 180 HNTMTTQSRTCSGFSQYQN-----KYEIIEHN-SHTNRTE 281
           H T+TTQ+ +    ++++N     KYEI+  N SHTN  E
Sbjct: 68  HKTLTTQNESIQLGNRFKNRYFEFKYEIVRGNYSHTNEDE 107


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 366 SDKTKSKYSIGGKDINNEEVK-NDGSACGDNENKESTKSRKDVTR 497
           S  TKSK S+  K   +E  +  D  +C ++E+ +  KS+KDV +
Sbjct: 316 SKSTKSK-SLSMKTTYSESSQLRDSDSCSEDESWDKQKSKKDVKK 359


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 237 KYEIIEHNSHTNRTETKQG-KRDFSIETEICILRRHYGNKRNKISDKTKSKYSIGGKDIN 413
           K +I E+     +   K+G K+D   E E    ++    K+NK S++ + K     KD  
Sbjct: 65  KDKIEENKEKREKKNKKKGNKKDEDEEEEEDKDKKKKDKKKNKDSEEEEDKK----KD-- 118

Query: 414 NEEVKNDGSACGDNENKESTKSRKD 488
            ++ KND S   + ENK+    RK+
Sbjct: 119 -KKKKNDSSDESEEENKKRKNKRKN 142


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 405 DINNEEVKNDGSACGDNENKESTKSRKD 488
           D   +E K DG    D+ENKE  + +K+
Sbjct: 123 DSKRDEKKKDGEKKEDDENKEDNEKKKE 150


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +3

Query: 90  IIDELLAEYTITMGKLKEVCEDAKVIY------KKSHNTMTTQSRTCSGFSQYQNKYEII 251
           +I +  + YT  +G+++++ ++   +       +K+    T+Q+RTC G   Y+NK  ++
Sbjct: 131 LIMQKSSSYTAQVGEMEKIRDEVGSVINEILTIRKALALATSQTRTCLGLIAYKNKKIVL 190

Query: 252 EHNSHTNRT 278
                T  T
Sbjct: 191 NQLKMTLTT 199


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +3

Query: 93  IDELLAEYTITMGKLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTN 272
           I E L ++    GK+ E  +  K I ++S N+M+  S+T  G  + +    +++  +  +
Sbjct: 69  IKEHLMKFKAKAGKILEEKQSVKPINEESQNSMSFLSQTSEGEQKEELSVGVVDEQASES 128

Query: 273 RTETKQGK 296
             + +  K
Sbjct: 129 SIQQEARK 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,915
Number of Sequences: 27780
Number of extensions: 259976
Number of successful extensions: 915
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)