Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j17
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.69 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.69 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +3

Query: 201 SRTCSGFSQYQNKYEIIEHNSHTNRTETKQGKRDFSIETEICILRRHYGNKRNKISDKTK 380
           S TCS     ++    I  NS+ + +    G+R  +  +    L +    +++K   K K
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKK 77

Query: 381 SKYSIGGKDINNEEVKNDGS 440
           SK  +      +  +KN G+
Sbjct: 78  SKTILAVNAEADITLKNAGT 97


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +3

Query: 201 SRTCSGFSQYQNKYEIIEHNSHTNRTETKQGKRDFSIETEICILRRHYGNKRNKISDKTK 380
           S TCS     ++    I  NS+ + +    G+R  +  +    L +    +++K   K K
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKK 77

Query: 381 SKYSIGGKDINNEEVKNDGS 440
           SK  +      +  +KN G+
Sbjct: 78  SKTILAVNAEADITLKNAGT 97


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 386 FGFSFIRYLIAFVT 345
           +GFSF+ Y+  F+T
Sbjct: 227 YGFSFLLYVSGFIT 240


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 682 AGSVFDLFKI*VEHDA 635
           +G+VFDL  I + HDA
Sbjct: 170 SGTVFDLINIHLFHDA 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,346
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)