Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j16
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    47   2e-06
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   4.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.8  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 38/56 (67%)
 Frame = +3

Query: 498 WTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLI 665
           WTI+     F+V+T +VV+R I +++P   + N+FD  +  +PDLYGP WI+ T+I
Sbjct: 50  WTIK---DSFNVETKDVVQRCIHTLIP---TVNFFDV-VDDRPDLYGPFWITTTVI 98


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 421 IKITPLTKRPELFQKQRLNLNRITTS-GQ*STIRNTLMCRPVKLWRGLY 564
           I+I P  +RP+LF +  L++ R+        T RN  +   V+L++G+Y
Sbjct: 390 IQIKPYFERPDLFDEHPLHVQRVANQCWDIHTKRNDSII--VQLFQGMY 436


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 353 IVFRGIVLEI*QLARMDVRHGDRSLRMF 270
           I+ R ++  I +L   D+RHG   LR+F
Sbjct: 648 ILLRFLLSRIEELGSSDIRHGSVLLRLF 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,794
Number of Sequences: 5004
Number of extensions: 53471
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)