Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j16
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493...    61   7e-10
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    58   8e-09
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    35   0.067
12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490     28   5.8  

>05_05_0081 +
           22248963-22249016,22249120-22249165,22249259-22249357,
           22250178-22250337,22250858-22251128,22251295-22251486
          Length = 273

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 441 ETPGAVPEAETQPQSN-HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIK 617
           + PG   + + + Q+N   ++ +  Y  YF+V T  VV+R+ISSV P     + F  KI 
Sbjct: 60  QPPGTPADGDVETQTNWKGYFNVASYAPYFNVDTDVVVDRLISSVYPM----DGFFRKID 115

Query: 618 GKPDLYGPIWISLTLI 665
             PD+YGP+WI+ TLI
Sbjct: 116 ANPDMYGPLWITTTLI 131


>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 29/56 (51%), Positives = 34/56 (60%)
 Frame = +3

Query: 498 WTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLI 665
           +++  Y+ YFDV TS+VVERI  SV P    R  F EK    PDLYGP W   TLI
Sbjct: 92  FSVAAYKPYFDVDTSDVVERIWESVFP---FRGTFTEKTSENPDLYGPFWTCTTLI 144


>05_03_0449 - 14161812-14162902,14163121-14163153,14164248-14164457,
            14166348-14167011,14167129-14167287,14167449-14167563,
            14167672-14167867,14167965-14168286,14168695-14168865,
            14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 439  TKRPELFQKQRLNLNRITTS-GQ*STIRNTLMCRP--VKLWRGLYHQYCPRKSLETILMR 609
            + RP L +  R+ L+  T S  Q +++  +++C    +KL R LY Q  P   L     R
Sbjct: 954  SSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGIKLVRLLYEQILPTMLLSAGEAR 1013

Query: 610  R*KANPTCMDLSGF 651
               A P C    GF
Sbjct: 1014 LGSAGPVCSSFEGF 1027


>12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490
          Length = 241

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 556 GLYHQYCPRKSLETILMRR*KANPTCMDLSGF 651
           G+ HQ C + S++T  + R   +P   ++ GF
Sbjct: 66  GIEHQSCSKSSIQTFALSRNDFSPIAQEVEGF 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,231
Number of Sequences: 37544
Number of extensions: 279613
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)