Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j16
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   31   1.1  
SB_12753| Best HMM Match : M (HMM E-Value=0.0006)                      28   5.9  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          28   7.9  

>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = +3

Query: 495 FWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLI 665
           FWT EYYQ +FDV T +V  RI+ S++P    RN+    I+  PDLYGP W+  TL+
Sbjct: 86  FWTFEYYQAFFDVDTYQVGHRILGSMVP-AYKRNFLISHIRPNPDLYGPFWVCATLV 141


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 101 LCFSIYGLLKFTKVAFESLVGTIPSFFSYVS 9
           LCFSI+ +L  T++ F  +V ++ ++F +VS
Sbjct: 186 LCFSIWQMLVDTRIPFVVIVASLDTWFEFVS 216


>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 LIKITPLTKRPELFQKQRLNLNRITT 495
           L +IT +TK+PE F+K+++  ++IT+
Sbjct: 88  LEEITHVTKKPEFFEKEKILQDQITS 113


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 218 FTVQYWLV-KMLTSYIKFQVIAKV*KSILFQTKKRNFTIILC 96
           +TV+Y L    L SY   + + K  +++  +TK  N+TI LC
Sbjct: 185 YTVEYSLTGDQLQSYQDGKGVVKGTRAMTTKTKSHNYTIFLC 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,527
Number of Sequences: 59808
Number of extensions: 368869
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)