Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j16
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27490.1 68418.m03286 integral membrane Yip1 family protein c...    62   4e-10
At3g05280.1 68416.m00576 integral membrane Yip1 family protein c...    61   6e-10
At2g39805.1 68415.m04889 integral membrane Yip1 family protein c...    55   5e-08
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    30   1.2  
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    30   1.2  
At4g25930.1 68417.m03729 hypothetical protein contains Pfam prof...    30   1.6  
At4g04720.1 68417.m00693 calcium-dependent protein kinase, putat...    27   8.5  
At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative / phos...    27   8.5  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    27   8.5  

>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 282

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +3

Query: 474 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPI 644
           +PQS+   H F T+  Y+ YFDV TS+VVER+  S+ P    R  F EK    PDLYGP 
Sbjct: 74  EPQSSGWLHRF-TVGAYKPYFDVDTSDVVERLKESLFP---FRGTFTEKTANNPDLYGPF 129

Query: 645 WISLTLI 665
           WI  TLI
Sbjct: 130 WICTTLI 136


>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +3

Query: 474 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPI 644
           +PQS    H F T+  Y+ +FDV TS+VVER+  S+ P    R  F EK   KPDLYGP 
Sbjct: 73  EPQSGGWLHKF-TVGAYKPFFDVDTSDVVERLKESLFP---FRGTFTEKTADKPDLYGPF 128

Query: 645 WISLTLI 665
           WI  TLI
Sbjct: 129 WICTTLI 135


>At2g39805.1 68415.m04889 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 275

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +3

Query: 474 QPQSN-HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 650
           QP +N   F+ +  Y +YFDV T  V+ R++SS+ P   S ++F+ KI   PDLYG +WI
Sbjct: 70  QPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYP--TSGDFFN-KIDANPDLYGLVWI 126

Query: 651 SLTLI 665
             TL+
Sbjct: 127 CTTLV 131


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 202 GLSKC*RRTLNSKLLLKYKNRYCFRPRNETL 110
           GLS+  +RT N+KLLL   NR C  P  E L
Sbjct: 63  GLSETEKRTNNTKLLLTLLNRNCESPFRECL 93


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 157 AITWNLMYDVNILTSQYCTVKFSKICLISFF 249
           ++ W  M+ VNIL++      F K+CL +++
Sbjct: 261 SVKWEKMFSVNILSTNCLDANFWKLCLAAYY 291


>At4g25930.1 68417.m03729 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 434

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 504 LSRSCDSIEVESLLLEQLRAFRQRSNFD*KYYYYCIDLYVLPLHQYAQFAHCVPGNSPGN 325
           L R+ + +E    +  Q   FR   +++ KY YY  D+  L +      A C+  +S  +
Sbjct: 15  LMRNHNKVETLVHMASQFMVFRAEESWEEKYVYYTEDIGDLCIFLGHSEAFCIQASSGSS 74

Query: 324 LT 319
           LT
Sbjct: 75  LT 76


>At4g04720.1 68417.m00693 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase(CDPK) [Carrot] SWISS-PROT:P28582
          Length = 531

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 513 YQKYFDVQTSEVVERIISSVLPQKVSRN---YFDEKIKGKPDLYGPIWISLT 659
           Y K  D+ ++ V+  I+ S +P   + N    FDE IKG+ D     W S++
Sbjct: 257 YGKEIDIWSAGVILYILLSGVPPFWAENEKGIFDEVIKGEIDFVSEPWPSIS 308


>At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminussimilar to phosphatidylinositol
           transfer-like protein IV (GI:14486707) [Lotus
           japonicus];
          Length = 558

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 276 NVFLNIILLEKRNQTNFRKFHCTILAC 196
           NV L++ +LE+ N  +F+K  C+ L+C
Sbjct: 4   NVDLDVCVLERPNVCSFKKRSCSKLSC 30


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 406 IVIFLIKITPLTKRPELFQKQRLNLNRIT 492
           I +FL+  T  ++ P++F ++ +N+NR T
Sbjct: 216 IRVFLVPSTESSESPKIFHERNMNINRNT 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,960
Number of Sequences: 28952
Number of extensions: 253585
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)