Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j13
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   145   6e-36
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.4  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   3.2  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   5.6  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   5.6  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.6  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    26   5.6  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.5  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   7.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   7.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   7.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.9  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   9.9  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   9.9  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  145 bits (351), Expect = 6e-36
 Identities = 72/160 (45%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
 Frame = +2

Query: 185 LSKT-LLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXX 361
           LSK  +L++Y DLP    KV+A Y+WIDG   H+R K  TL+  P +   L +WN+    
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSS 67

Query: 362 XXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRD 541
                       LKP A+Y DPFRRG+++LV+   Y     P   NHR  C +  ++  D
Sbjct: 68  TGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD 127

Query: 542 HEPWFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVG 661
            E WFGIEQEY +LD   RPFGWP  G P  QGP+YCGVG
Sbjct: 128 KETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVG 167


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 346  IPYRQVFRSFWNVVQSPVFATNML 275
            +PY Q +R FWN   +P+++  +L
Sbjct: 2160 VPYGQAWRFFWNTSNTPLWSIIIL 2183


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 101 KMSETQNKVQDNPKILSGPVL-QNSPNAFLSKTLLDRYRDLPLPEDK 238
           K  E ++++++  K + G  + +NS    LS  LLD+Y    +P+D+
Sbjct: 259 KAKEYEDRIRNAGKFVFGENMDRNSSGLLLSDELLDQYSISNIPKDE 305


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 654 PQ*YGPWAGGLPVVGHPNGLRSESRSTY 571
           P+    WA  L ++G P GLR    +T+
Sbjct: 123 PEMLSQWASNLNLLGIPTGLRDSDATTH 150


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 149 IKFLDYLALCFEFPTFF*HRLITFYCL 69
           ++++   +L  ++P FF H  +T +CL
Sbjct: 265 LQWMAVFSLYAKYPAFFEHHFLTIFCL 291


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 PEAPGHIQGPVPARKPRACHVRH 465
           P  P H+ GP+   +P+A  V H
Sbjct: 148 PLRPSHVSGPLSPPEPKAASVDH 170


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 173 ESSVARDPIKFLDYLALCFEFPTFF*HRLITFYCL 69
           E+++ +  + +LDYLA C   P +      +FYCL
Sbjct: 108 ETNLGKPELFWLDYLATCVRVP-YACQGYSSFYCL 141


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  SGARKMSETQNKVQDNPKILSGPVLQNSPNAFLSKTL 199
           S  RKMS++   V D   I++G  L+N   A L   L
Sbjct: 552 SEGRKMSKSLGNVIDPMDIINGVTLENMKKALLEGNL 588


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 639 PWAGGLPVVGHPNG-----LRSESRSTYSCSMPNHGSWSLQRSYASWHLI 505
           PW   L  +G  +G     + S S + +  S   + SW +Q S++SW+++
Sbjct: 160 PWGVCLFALGAESGHVHLSIMSHSSTPFFKSFDLNCSWVVQLSFSSWNVV 209


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 96  LEKCRKLKTKCKIIQKFYRVPCYRTLRMHSSRRHCWTGIEIYRCRKTRSSPHTYGSTAPA 275
           LE   KL  +  ++ + Y +P  R +++ S R         Y C +    PH  GS  P 
Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSER---------YECPECLFQPHLVGSEQPG 273

Query: 276 -SMFVAKT 296
            S F+  T
Sbjct: 274 LSEFIFDT 281


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 640 SLGRRASSCRPPKRSKVRVEEHVLLLYAEPRLVVSAAVV 524
           SL ++ S+   P   +  ++  +L LYA PR  VS++ +
Sbjct: 197 SLSKQPSTVHAPSTRQRDLKSSILSLYASPRPQVSSSSI 235


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 143 ILSGPVLQNSPNAFLSKTLLD 205
           ++  P ++N PN F+SK L+D
Sbjct: 447 VILDPHIKNDPNYFVSKELID 467


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 599 PFGWPTTGSPPAQGPYY 649
           P+G P   +PPA  PYY
Sbjct: 122 PYGAPYQQAPPAGAPYY 138


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 CWTGIEIYRCRKTRSSPHTYGSTAPASMF 284
           C+T +E ++C K  +  + Y +  P+  F
Sbjct: 822 CFTALEYFKCLKVLNLSYNYLTEIPSKFF 850


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 98  RKMSETQNKVQDNPKILSGPVLQNSPNAFLSKTLLDRYRDLPLPEDKVLATYVWI 262
           RK+S  + K+ D   +L         +  L K+L++  R L   ED++  T +WI
Sbjct: 439 RKISSREIKMLDARSMLKNSF---DGSRDLQKSLIEHVRTLRRIEDEITLTKMWI 490


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 595 KVRVEEHVLLLYAEPRLVVSA 533
           K+ VE+HVLL   EP+L+  A
Sbjct: 421 KLIVEDHVLLTIDEPKLIDKA 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,461
Number of Sequences: 5004
Number of extensions: 59170
Number of successful extensions: 151
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)