Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j13
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 144 4e-35
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 144 6e-35
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 115 3e-26
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 113 9e-26
12_02_0346 - 17776871-17781445 29 4.4
08_02_1178 + 24958623-24959894 29 4.4
02_05_0774 + 31667839-31668540 29 4.4
07_03_0523 + 19030078-19031109 28 5.9
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 28 5.9
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 28 7.7
08_01_0263 + 2141679-2141835,2142033-2142448 28 7.7
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 28 7.7
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 28 7.7
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 144 bits (350), Expect = 4e-35
Identities = 66/148 (44%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Frame = +2
Query: 233 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 412
DK++A Y+W+ G+G +R K RT++ E P +LP WNY L PQA
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 413 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCRDHEPWFGIEQEYVLLD 586
I++DPFR GN++LVMCDTY + +P TN R + + + + PWFGIEQEY LL
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQ 935
Query: 587 SDLR-PFGWPTTGSPPAQGPYYCGVGAN 667
D+ P GWP G P QGPYYC VG++
Sbjct: 936 RDVNWPLGWPVGGYPGPQGPYYCAVGSD 963
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 144 bits (349), Expect = 6e-35
Identities = 67/148 (45%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Frame = +2
Query: 233 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 412
+K++A Y+WI GSG +R K RTL+ P LP WNY L PQA
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 413 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCRDHEPWFGIEQEYVLLD 586
I++DPFR+GN++LVMCD Y + +P TN R + + EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 587 SDLR-PFGWPTTGSPPAQGPYYCGVGAN 667
D+ P GWP G P QGPYYCG+GA+
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGAD 164
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 115 bits (277), Expect = 3e-26
Identities = 60/147 (40%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Frame = +2
Query: 233 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 412
DK++A Y+W+ GSG +R K RT+ LP WNY L PQA
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 413 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDR--CRDHEPWFGIEQEYVLLD 586
I++DPFRRG+++LVMCD Y +P TN R + + PW+GIEQEY LL
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQ 136
Query: 587 SDLR-PFGWPTTGSPPAQGPYYCGVGA 664
D+ P GWP GPYYC GA
Sbjct: 137 KDVNWPLGWP--------GPYYCAAGA 155
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 113 bits (273), Expect = 9e-26
Identities = 54/133 (40%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Frame = +2
Query: 278 HVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVM 457
H++ + TL+ + P LP WN+ L PQAI+RDPFR+G ++LVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 458 CDTYDYSMQPTKTNHRIKCQEAYDR--CRDHEPWFGIEQEYVLLDSDLR-PFGWPTTGSP 628
CD Y + +P TN+R + + EPW+GIEQEY LL + P GWP G P
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 629 PAQGPYYCGVGAN 667
QGPYYC GA+
Sbjct: 179 GPQGPYYCAAGAD 191
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 102 KCRKLK-TKCKIIQKFYRVPCYRTLRMHSSRRHCWTGIEIYRCRKTRSSPHTYGSTAPAS 278
K +K+K ++C + F +P +L ++ S + +G+E+ K SS + G AP S
Sbjct: 978 KLQKIKISECPKLLSFPPIPWTNSL-LYVSIQGVDSGLEMLNYSKDESSLYITGKDAPGS 1036
Query: 279 MF 284
MF
Sbjct: 1037 MF 1038
>08_02_1178 + 24958623-24959894
Length = 423
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 568 LLYAEPRLVVSAAVVRFLAFNTVVCLCWLHA 476
L YA P V S A +RF V LC LHA
Sbjct: 98 LRYALPDRVFSPAAIRFYVAEIVSALCELHA 128
>02_05_0774 + 31667839-31668540
Length = 233
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 563 EQEYVLLDSDLRPFGWPT--TGSPPAQGPYYCGVGA 664
+Q+ L + LRP G P +GSPP GP+ GA
Sbjct: 23 QQQRALAGAFLRPRGQPMKQSGSPPRAGPFAAVAGA 58
>07_03_0523 + 19030078-19031109
Length = 343
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 388 RHAPEAPGHIQGPVPARKPRACHVRH 465
R + G +QGPVPAR+P A ++H
Sbjct: 297 RQRVDHQGRVQGPVPARRP-ALRLKH 321
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 642 GPWAGGLPVVGHPNGLRSESRSTYSCSMPNHGSWSLQRSYASWHL 508
G +GGLP G S S +YS S+P+ ++QRS +S L
Sbjct: 46 GNVSGGLPHFGGAVSSSSSSPPSYSSSLPSSYYNNIQRSISSHSL 90
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 218 LPLPEDKVL-ATYVWIDGSGEHVRCK 292
+PL E VL VWID SG+H RC+
Sbjct: 397 IPLSEQDVLFVRVVWIDTSGQH-RCR 421
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 585 SRSTYSCSMPNHGSWSLQRSYASW 514
S ++Y PN G W LQ +Y SW
Sbjct: 18 SGASYGVGKPN-GGWDLQTNYTSW 40
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +1
Query: 232 RQGPRHIRMDRRLRRACSLQRQDFELHSRNS*RPADMELRRQLYRPDDKHELRHAPEAPG 411
R P H R LR A +L+R + + + + +++R L H + P++ G
Sbjct: 71 RANPTHHRR-LLLRSANTLERNTLKKKPKEA-VTTEEKVKRDLSHT--VHGVHPPPQSAG 126
Query: 412 HIQGPVPARKPRACHVRHIRLQH 480
+ AR PR H H RL H
Sbjct: 127 DLSA---ARNPRGAHFNHRRLHH 146
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 397 PEAPGHIQGPVPARKPRACHVRHIRLQHATNKDKPP 504
P P P+ ++PR H H R NK PP
Sbjct: 107 PSRPFQNSHPISIQRPRLAHPEHSRNTFNPNKTTPP 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,219,029
Number of Sequences: 37544
Number of extensions: 427370
Number of successful extensions: 1200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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