Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j13
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   1e-43
SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)                    30   1.5  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           30   1.5  
SB_48532| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)           30   2.0  
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)                     29   3.4  
SB_55982| Best HMM Match : Transposase_11 (HMM E-Value=2.3)            29   3.4  
SB_49498| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   3.4  
SB_50058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_27322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)                  29   4.5  
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        28   6.0  
SB_38894| Best HMM Match : GatB (HMM E-Value=5)                        28   6.0  
SB_25277| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     28   7.9  
SB_2688| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score =  173 bits (421), Expect = 1e-43
 Identities = 76/159 (47%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
 Frame = +2

Query: 197 LLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXX 376
           +L++Y+ L    D+V A Y+W+DGSGE +RCK RTL+  P++ +DLPIWN+         
Sbjct: 14  VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPKSHEDLPIWNFDGSSTAQAE 72

Query: 377 XXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAY--DRCRDHEP 550
                 +L P  I++DPFR GN++LV+C+TY +  +PT+TN R  C +    ++ + H P
Sbjct: 73  GCNSDVYLHPINIFKDPFRGGNNILVLCETYQFDHKPTRTNKRKTCFDVMESEKVKPHRP 132

Query: 551 WFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVGAN 667
           WFGIEQEY LLD D  P GWP  G P  QGPYYCGVG N
Sbjct: 133 WFGIEQEYTLLDIDGHPLGWPKGGFPGPQGPYYCGVGTN 171


>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
          Length = 349

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 443 HVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHEPWF 556
           H+LV+ +  +  + P K N  +  Q   + C D EPWF
Sbjct: 148 HILVISNAANL-LTPEKANIMLSSQTYKEECTDTEPWF 184


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 405 PRPYTGTRSGAETTCLSCATHTITACNQQRQ 497
           P   T  R+G++ TC  CA+H +    Q R+
Sbjct: 518 PHMITFCRTGSDATCQDCASHPVACITQARK 548


>SB_48532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 405 PRPYTGTRSGAETTCLSCATHTITACNQQRQTTVLNAKKR 524
           PR  + TR+GA T+C S  T  IT CN   +  +  +K R
Sbjct: 8   PRDKSVTRTGASTSCQS--TSYITYCNSSSKACIRESKWR 45


>SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 161 LQNSPNAFLSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKD 331
           L  S    L   L D+  DL  P+ +   T +W D +  +++  +  LN +PE   D
Sbjct: 137 LTGSNKKTLLSQLPDKLHDLLTPDSRDKVTQLWRDFNNIYIQITNMELNILPEIIAD 193


>SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
          Length = 276

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 161 LQNSPNAFLSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKD 331
           L  S    L   L D+  DL  P+ +   T +W D +  +++  +  LN +PE   D
Sbjct: 113 LTGSNKKTLLSQLPDKLHDLLTPDSRDKVTQLWRDFNNIYIQITNMELNILPEIIAD 169


>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q ++A W L+R+ V+
Sbjct: 830 KSAKESRRWLSEPSYGCWPQQLNFAVWGLLRFHVY 864


>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S +  S P++G W  Q ++A W  +R+ V+
Sbjct: 680 KSAKESRWWLSEPSYGYWPQQLNFAVWGFLRFHVY 714


>SB_55982| Best HMM Match : Transposase_11 (HMM E-Value=2.3)
          Length = 513

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 621 PVVGHPNGLRSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           PVV H    +S   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 155 PVVTH----KSAKESRRWLSEPSYGYWPQQLNFAVWGFLRFHVY 194


>SB_49498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           RS   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 95  RSAKESRLWLSEPSYGYWPQQLNFAVWGFLRFHVY 129


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 631 RRASSCRPPKRSKVRVEEHVLLLYAEPRLVV 539
           R  S CRPPK + V  + H   + AE RLV+
Sbjct: 311 RDISKCRPPKDAGVTAQFHSCAIPAEMRLVL 341


>SB_50058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q+++A W  +R+ V+
Sbjct: 58  KSAKESRRWLSEPSYGYWPQQQNFAVWGFLRFHVY 92


>SB_27322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q+++A W  +R+ V+
Sbjct: 67  KSAKESRRWLSEPSYGYWPQQQNFAVWGFLRFHVY 101


>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
          Length = 1259

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           RS   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 110 RSAKESRRWLSEPSYGYWPQQLNFAVWGFLRFHVY 144


>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 140 KILSGPVLQNSPNAFLSKTLLDR--YRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYI 313
           + LS PVL  S    +    ++R  +  LP+ + +   T  + + S  H++  D+  N +
Sbjct: 543 RCLSAPVLSESDPRLMLLYDVNRADHSLLPILDQEANGTLAFFEKSSTHLKTDDQEFNIL 602

Query: 314 PET 322
           P+T
Sbjct: 603 PQT 605


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +1

Query: 328 RPADMELRRQLYRPD-DK--HELRH-APEAPGHIQGPVPARKPRACHVR 462
           RP D+E   + +  + DK  H      P +   I  P PA+KPR  H +
Sbjct: 602 RPRDLETHSKAHHANVDKMTHSANEDTPRSNAEIPAPSPAKKPRKAHTK 650


>SB_38894| Best HMM Match : GatB (HMM E-Value=5)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 111 KSAKESRRWLSEPSYGYWPQQLNFAVWEFLRFHVY 145


>SB_25277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 50  KSAKESRRWLSEPSYGYWPQQLNFAVWRFLRFHVY 84


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +2

Query: 56  VLPIINNKR*LSGARKMSETQNKVQDNPKILSGPVLQNSPNAFLSKTLLDRYRDLPLPED 235
           V  ++ N   ++GAR+M    N VQ   +I+  P  Q+    +    +L    DLPLPED
Sbjct: 364 VTGVVRNLADVNGAREMYIDHNFVQLLTQIME-PFSQDEDLVYNISRILSLL-DLPLPED 421

Query: 236 KV 241
            +
Sbjct: 422 MI 423


>SB_2688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 RSESRSTYSCSMPNHGSWSLQRSYASWHLIRWFVF 490
           +S   S    S P++G W  Q ++A W  +R+ V+
Sbjct: 61  KSAKESRQWLSEPSYGYWPQQLNFAVWGFLRFHVY 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,197,184
Number of Sequences: 59808
Number of extensions: 491278
Number of successful extensions: 1429
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)