Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j13
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 180 6e-46
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 180 6e-46
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 177 8e-45
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 173 1e-43
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 168 3e-42
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 151 6e-37
Z81062-13|CAB82210.1| 333|Caenorhabditis elegans Hypothetical p... 29 3.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 9.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 9.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 9.1
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 180 bits (439), Expect = 6e-46
Identities = 76/141 (53%), Positives = 94/141 (66%)
Frame = +2
Query: 245 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRD 424
A Y+WIDGSGE++R K RT ++ P P+ LPIWN+ +LKP AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 425 PFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHEPWFGIEQEYVLLDSDLRPF 604
PFR+G + LVMC+TYD +PT TN+R +C+E ++ D PWFG+EQEY LLD D PF
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 149
Query: 605 GWPTTGSPPAQGPYYCGVGAN 667
GWP G P QGPYYCGVGAN
Sbjct: 150 GWPKNGFPGPQGPYYCGVGAN 170
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 180 bits (439), Expect = 6e-46
Identities = 76/141 (53%), Positives = 94/141 (66%)
Frame = +2
Query: 245 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRD 424
A Y+WIDGSGE++R K RT ++ P P+ LPIWN+ +LKP AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 425 PFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHEPWFGIEQEYVLLDSDLRPF 604
PFR+G + LVMC+TYD +PT TN+R +C+E ++ D PWFG+EQEY LLD D PF
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 152
Query: 605 GWPTTGSPPAQGPYYCGVGAN 667
GWP G P QGPYYCGVGAN
Sbjct: 153 GWPKNGFPGPQGPYYCGVGAN 173
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 177 bits (430), Expect = 8e-45
Identities = 76/161 (47%), Positives = 99/161 (61%)
Frame = +2
Query: 185 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 364
L + +D + LP K ATYVWIDG+GEH+R K RT+N P+ + PIWNY
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 365 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDH 544
+L+P A++ DPF G +VLVMCDT D+ M+PT TNHR C E + D
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQ 131
Query: 545 EPWFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVGAN 667
+PWFG+EQEY+++D D P GWP G P QG YYCG+GA+
Sbjct: 132 QPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGAD 172
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 173 bits (420), Expect = 1e-43
Identities = 74/161 (45%), Positives = 98/161 (60%)
Frame = +2
Query: 185 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 364
L + +D + LP K ATYVWIDG+GE +R K RT N P+ + PIWNY
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 365 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDH 544
+L+P A++ DPF +G++VLVMC+T D +M+PT TNHR C + +H
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131
Query: 545 EPWFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVGAN 667
PWFG+EQEY+++D D P GWP G P QG YYCGVGA+
Sbjct: 132 HPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGAD 172
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 168 bits (409), Expect = 3e-42
Identities = 75/161 (46%), Positives = 97/161 (60%)
Frame = +2
Query: 185 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 364
L ++D++ L K+ ATYVWIDG+GE++R K RT + +P+ +D PIWNY
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 365 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDH 544
+L+P A Y DPF G + LVMCDT D+ MQPT T+HR C E RD
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDT 131
Query: 545 EPWFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVGAN 667
PWFG+EQEY+++D D P GWP G P QG YYC VGA+
Sbjct: 132 RPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGAD 172
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 151 bits (365), Expect = 6e-37
Identities = 59/139 (42%), Positives = 89/139 (64%)
Frame = +2
Query: 251 YVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRDPF 430
Y+WID + E++R K +T ++ P+TP DLPIWN+ +++P A+YRDPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 431 RRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHEPWFGIEQEYVLLDSDLRPFGW 610
R G + + +C+T + +P TN R +C + ++ +D EPWFG+EQE+ LL +D P+ W
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNW 154
Query: 611 PTTGSPPAQGPYYCGVGAN 667
P G P QGPYYCGVG++
Sbjct: 155 PVNGFPAPQGPYYCGVGSD 173
>Z81062-13|CAB82210.1| 333|Caenorhabditis elegans Hypothetical
protein F15A4.13 protein.
Length = 333
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 447 TWFPRRNGSLYMAWGFRCVSEFVLVV 370
TWFPR ++ A F CV +F+L +
Sbjct: 142 TWFPRDLFRIFNAQSFYCVIDFILKI 167
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 596 RPFGWPTTGSPPAQGPYYCGVG 661
RP G P TGSPP P+ G G
Sbjct: 452 RPTGSPPTGSPPTGRPHRGGPG 473
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 596 RPFGWPTTGSPPAQGPYYCGVG 661
RP G P TGSPP P+ G G
Sbjct: 473 RPTGSPPTGSPPTGRPHRGGPG 494
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 596 RPFGWPTTGSPPAQGPYYCGVG 661
RP G P TGSPP P+ G G
Sbjct: 458 RPTGSPPTGSPPTGRPHRGGPG 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,253
Number of Sequences: 27780
Number of extensions: 354254
Number of successful extensions: 967
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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