Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j12
         (261 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4HFF6 Cluster: Putative uncharacterized protein; n=3; ...    32   2.2  
UniRef50_Q38DI9 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  

>UniRef50_A4HFF6 Cluster: Putative uncharacterized protein; n=3;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania braziliensis
          Length = 1055

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 171  VSEFNISSCSTCKW*CTESRGRSMGRSKNRRVLHTYSYRDR 49
            V   + +S S  KW CTE RGR+  R ++R     +S R R
Sbjct: 1014 VGSSHYTSSSRSKWSCTEGRGRASDRGRSRGRGGPFSIRPR 1054


>UniRef50_Q38DI9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 2086

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 228 NITIALNTDGCHRRHPRRYVSEFNISSCSTCKW*CTESRGRSMGRSKNRRVLHTYSYRDR 49
           N T   + DGC +R    YV EF    CS+      E   RS  R   RR+ ++++   R
Sbjct: 345 NFTSVADDDGCSKRWTEEYVREFVQLVCSSDPQ--HEILQRSFSRDSLRRIFYSFTANGR 402


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,699,368
Number of Sequences: 1657284
Number of extensions: 2019104
Number of successful extensions: 4652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4648
length of database: 575,637,011
effective HSP length: 64
effective length of database: 469,570,835
effective search space used: 10330558370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)