Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j12
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.2  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   2.7  
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397...    26   4.8  
06_03_1061 + 27282979-27286854                                         25   6.3  
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    25   8.4  
02_04_0275 - 21469391-21470650                                         25   8.4  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 153 SSCSTCKW*CTESRGRSMGRSKNRR 79
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 219 IALNTDGCHRRHPRRYVSEFNISSC 145
           +A   DGC RR+P  Y S+  I +C
Sbjct: 254 LARMQDGCIRRYPALYGSDDRIQAC 278


>05_06_0202 -
           26339467-26339494,26339579-26339624,26339742-26339785,
           26340729-26340851,26341010-26341124,26341447-26342207,
           26342305-26342711,26342798-26342900,26344642-26345144
          Length = 709

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 240 LFTQNITIALNTDGCHRRH-PRRYVSEFN 157
           L +Q IT ALN +   R+H PRRY SE N
Sbjct: 679 LKSQEITEALNDELSQRQHKPRRY-SEMN 706


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 151  RYVKFGNISTRVSSMTTISVKCNSDVLCK*KISVKK 258
            RY ++G ++T + S+T  S    +  LC    S+KK
Sbjct: 1152 RYAEWGQVTTSLESLTVDSTLFLNSPLCAVLTSLKK 1187


>09_06_0293 +
           22086359-22086496,22086604-22087213,22087407-22087938,
           22088617-22089151
          Length = 604

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 260 FFFTLIFYLHKTSLLHLTLMVVIDDTRVDMF 168
           FFF  +      +LL +   + +DDTR D F
Sbjct: 54  FFFADVIQAQLPALLAVATSIALDDTRPDGF 84


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 139 RAARRYVKFGNISTRVSSMTTISVKCNSDVLCK*KISVKKK 261
           R + R+ ++  ++  VSS    S +  SDV CK +I   KK
Sbjct: 85  RGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKK 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,573,445
Number of Sequences: 37544
Number of extensions: 53330
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)