Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j12
         (261 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69910.1 68414.m08045 protein kinase family protein contains ...    26   3.9  
At4g39710.1 68417.m05620 immunophilin, putative / FKBP-type pept...    25   5.2  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    25   5.2  
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa...    25   9.1  

>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 213 LNTDGCHRRHPRRYVSEFNISSCSTCKW*C 124
           ++   C R    R  S F + +CS C W C
Sbjct: 125 VSDSSCSRLSLLRPCSPFTLPNCSRCPWDC 154


>At4g39710.1 68417.m05620 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative similar to
           FK506 binding protein 1 (GP:21535744) [Arabidopsis
           thaliana]
          Length = 217

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 127 SPFTRAARRYVKFGNISTRVSSMTTISVKCNSDVLCK*KISVKKK 261
           S +TR+ R  + F +     SS ++ S  C+S   C+ K+SVKK+
Sbjct: 11  SLYTRSFRPTIFFSS-----SSSSSFSCLCSSSSDCEPKLSVKKR 50


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 153 SSCSTCKW*CTESRGRSMGRSKNRRVLH 70
           +SCS C W CT        R   R +LH
Sbjct: 482 NSCSACPWLCTTGFFYECDREGCRFILH 509


>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 212

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 252 YTYFLFTQNITIALNTDGCH 193
           Y  F FT++IT  +N DG H
Sbjct: 108 YPKFHFTKDITAVVNGDGFH 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,920,045
Number of Sequences: 28952
Number of extensions: 46899
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)