Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j11
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937...    31   0.84 
09_02_0323 + 7265240-7265287,7265361-7265415,7266816-7266885,726...    29   2.6  
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    29   3.4  
10_08_0952 - 21770449-21770718,21771032-21771277,21771677-217719...    29   4.5  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   5.9  
03_03_0138 + 14766592-14766754,14768052-14768476                       28   7.8  
02_01_0551 - 4058205-4058879,4059278-4059344,4059523-4059592,405...    28   7.8  

>08_02_0316 +
           15690452-15690555,15690871-15690965,15693707-15693783,
           15693854-15693908,15695158-15695227,15695388-15695457,
           15696047-15696340
          Length = 254

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 457 LFNLKRHLQSFRCGSRSGRYIYEHTDVTKTTH*IEGATNL 338
           LF+LK HLQ +R G +SG+ + E +         +  TNL
Sbjct: 84  LFHLKSHLQKYRLGKQSGKEMAEQSKDASYILGAQSGTNL 123


>09_02_0323 +
           7265240-7265287,7265361-7265415,7266816-7266885,
           7267013-7267082,7267480-7267788
          Length = 183

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 457 LFNLKRHLQSFRCGSRSGRYIYEHT 383
           LF+LK HLQ +R G +SG+   E +
Sbjct: 8   LFHLKSHLQKYRLGKQSGKEASEQS 32


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 454 RAISRHRWNKHNSQRERGKFGF 519
           RA+ + R N H++  +RGKFGF
Sbjct: 571 RALRKRRRNAHDAAGQRGKFGF 592


>10_08_0952 -
           21770449-21770718,21771032-21771277,21771677-21771953,
           21772241-21772518,21773451-21773960
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 347 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSEN 502
           R+ D++ C  ++  F DV    GS P G+ +    + ++  IGG  T   ++
Sbjct: 431 RSFDAIRC--ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDD 480


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 443 FQVKELSRVIGGINTTVSENEGNLV-LGVKMP 535
           FQ+ E S   G  NT +S NEG +  +GV MP
Sbjct: 459 FQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMP 490


>03_03_0138 + 14766592-14766754,14768052-14768476
          Length = 195

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 454 RAISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHG 582
           R     RW + N + ERG  G R   A   + +G     +Q G
Sbjct: 60  RLCKGRRWCRSNGRHERGSVGGRSAVASLGKGKGSVGGSVQAG 102


>02_01_0551 -
           4058205-4058879,4059278-4059344,4059523-4059592,
           4059720-4059777,4059929-4060005,4060108-4060228
          Length = 355

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 457 LFNLKRHLQSFRCGSRSGRYIYEHT 383
           L++LK HLQ FR G +  +   EH+
Sbjct: 58  LYHLKSHLQKFRLGKQPHKEFSEHS 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,116
Number of Sequences: 37544
Number of extensions: 409910
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)