Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j11
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069) 42 6e-04
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 30 1.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 2.6
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16) 28 6.0
SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)
Length = 354
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 512 LVLGVKMPNIAGRGEKLQAEYSMGYRSTSNFNVTATKPYPHK 637
+V G+KM N+ GRGE + A+ G R+ +N+ + TKP+ K
Sbjct: 1 MVFGLKMNNLMGRGENVNADVGFGTRTKTNYQLGFTKPFHGK 42
>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 425 EGLEVT---FQVKELSRVIGGINTTVSENEGNLVLGVKMPNIAGRGEKLQAEYSMGYRST 595
EGL+ T F K++ ++ TT E V G+KM N+ GRGE + A+ G R+
Sbjct: 52 EGLKKTKADFVTKQVKKIFEA--TTFGE-----VFGLKMNNLMGRGENVNADVGFGTRTK 104
Query: 596 SNFNVTATKP 625
+N+ V P
Sbjct: 105 TNYQVDNNLP 114
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -1
Query: 516 TKFPSFSLTVVFIPPMTRDSSLT*NVTSSPSGV---DPGPDDTSMNTPMSR-KQPIES 355
T + S T VF P D+ L+ +SPS + D G DT+ +TP S PI S
Sbjct: 464 TSYDSLKSTGVFKPTTAIDTQLSTITPTSPSSITSSDVGSTDTATSTPTSSPSSPITS 521
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 460 ISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHGLSKH 594
++RHR +H R R + G A+HR G A I+HGL++H
Sbjct: 1217 LARHRI-RHGLARHRIRHGL----ARHRTRHGLARHRIRHGLARH 1256
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 460 ISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHGLSKH 594
++RHR +H R R + G A+HR G A I+HGL++H
Sbjct: 1226 LARHRI-RHGLARHRTRHGL----ARHRIRHGLARHRIRHGLARH 1265
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 460 ISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHGLSKH 594
++RHR +H R R + G A+HR G A I+HGL++H
Sbjct: 1199 LARHRI-RHGLARHRIRLGL----ARHRIRHGLARHRIRHGLARH 1238
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 460 ISRHRWNKHNSQRERGKFGF-----RCKNAKHRRPRGEASSGIQHGLSKH 594
++RHR +H R R + G RC A+H RG A +HGL++H
Sbjct: 1296 LARHRI-RHGLARHRIRHGLALHRIRCGLARHTIRRGLARHRTRHGLARH 1344
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 454 RAISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHGLSKH 594
R ++RHR +H R + G +HR G A I+HGL++H
Sbjct: 1330 RGLARHR-TRHGLARHTIRHGL----TRHRTRHGLARHTIRHGLARH 1371
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 460 ISRHRWNKHNSQRERGKFGFRCKN---AKHRRPRGEASSGIQHGLSKH 594
++RHR +H R R + G A+HR G A I+HGL++H
Sbjct: 1253 LARHRI-RHGLARHRIRHGLXXXXHVLARHRIRHGLARHRIRHGLARH 1299
>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 118 IVLVCLRVDSAHFGFLIVLCVFNGW 44
++ V L+ HFG +V CVF GW
Sbjct: 289 VLSVLLKDPEQHFGIPVVFCVFIGW 313
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 33 PTNNQPLNTHKTIKKPKWALSTRRQTSTILAT 128
PT+ QP+ T K+P L T +Q +T L T
Sbjct: 603 PTSQQPITEQPTTKQPTTELPTTKQPTTELPT 634
>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
Length = 505
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 317 DVIVRAHKVRRALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSR 466
+VI+ AH+ + M D+GV +D +G T GLEV + ++ +R
Sbjct: 60 EVILDAHRKKHMAFLMA---DLGVVVDKETGKHITKHGLEVDYSLEGHTR 106
>SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 509 NLVLGVKMPNIAG--RGEKLQAEYSMGYRSTSNFNVTATKPYPHKPLVPIVS 658
N VLGV N++ R K Y R + FN TA PY K + I S
Sbjct: 19 NRVLGVLQRNLSSCSRAIKEHCTYLSLVRPLTKFNTTAWSPYTSKEINSIES 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,956,581
Number of Sequences: 59808
Number of extensions: 473217
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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