Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j11
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon g... 60 1e-09
AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein. 60 1e-09
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 29 4.0
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 29 4.0
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 29 4.0
AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical... 29 4.0
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical pr... 28 7.0
X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein. 28 7.0
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon gene
protein 3 protein.
Length = 434
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
Frame = +2
Query: 200 KLDGVRARVDRVHVDGLNRXXXXXXXXXXXXLFHATDFEDVIVRAHKVRRALDSMGCFRD 379
K GV + V+ V G+ L+ + + ++++ +H R L +G +
Sbjct: 15 KASGVPSIVEAVQFHGVRITKNDALVKEVSELYRSKNLDELVHNSHLAARHLQEVGLMDN 74
Query: 380 IGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSEN-EGNLVLGVKMPNIAGRGE 556
ID S S+ EG V F V+E G+ VS N + ++ L ++ GRGE
Sbjct: 75 AVALIDTSP---SSNEGYVVNFLVREPKSFTAGVKAGVSTNGDADVSLNAGKQSVGGRGE 131
Query: 557 KLQAEYSMGYRSTSNFNVTATKPYPHKPLVPIVSASVYQ 673
+ +Y+ + FN++A KP+ VSA++Y+
Sbjct: 132 AINTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYR 170
>AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein.
Length = 434
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
Frame = +2
Query: 200 KLDGVRARVDRVHVDGLNRXXXXXXXXXXXXLFHATDFEDVIVRAHKVRRALDSMGCFRD 379
K GV + V+ V G+ L+ + + ++++ +H R L +G +
Sbjct: 15 KASGVPSIVEAVQFHGVRITKNDALVKEVSELYRSKNLDELVHNSHLAARHLQEVGLMDN 74
Query: 380 IGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSEN-EGNLVLGVKMPNIAGRGE 556
ID S S+ EG V F V+E G+ VS N + ++ L ++ GRGE
Sbjct: 75 AVALIDTSP---SSNEGYVVNFLVREPKSFTAGVKAGVSTNGDADVSLNAGKQSVGGRGE 131
Query: 557 KLQAEYSMGYRSTSNFNVTATKPYPHKPLVPIVSASVYQ 673
+ +Y+ + FN++A KP+ VSA++Y+
Sbjct: 132 AINTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYR 170
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 247 TINVHSINTSSYSI*FDGGFW 185
TIN HSIN ++S FD +W
Sbjct: 34 TINGHSINKENFSFNFDHSYW 54
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 247 TINVHSINTSSYSI*FDGGFW 185
TIN HSIN ++S FD +W
Sbjct: 34 TINGHSINKENFSFNFDHSYW 54
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 247 TINVHSINTSSYSI*FDGGFW 185
TIN HSIN ++S FD +W
Sbjct: 34 TINGHSINKENFSFNFDHSYW 54
>AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical
protein Y71H2AM.24 protein.
Length = 322
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 542 AGRGEKLQAEYSMGYRSTSNFNVTATKPYPHKPLVP 649
+G GE L E + +R+ +FN AT P P+ +VP
Sbjct: 277 SGSGELLNVEDNGEWRTPRDFNWLATTPSPNWKVVP 312
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 599 STCFDSPCCIPLEASP 552
S C DSPC +P E SP
Sbjct: 630 SECLDSPCALPAENSP 645
>Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical
protein M142.4 protein.
Length = 247
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 507 PSFSLTVVFIPPMTRDSSLT*NVTSSPSGVDPGPDDTS 394
PS + ++ F+PP+ S L+ N T SPS P DD+S
Sbjct: 180 PSAAGSLPFLPPLGFPSFLSQNSTKSPS--SPHSDDSS 215
>X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein.
Length = 263
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 507 PSFSLTVVFIPPMTRDSSLT*NVTSSPSGVDPGPDDTS 394
PS + ++ F+PP+ S L+ N T SPS P DD+S
Sbjct: 196 PSAAGSLPFLPPLGFPSFLSQNSTKSPS--SPHSDDSS 231
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +3
Query: 564 KRNTAWAIEARRISMSLLPNRILI-----NPSCLLYQRQFI 671
KRN I+ R+ +MSL NRI++ NP CL Y ++FI
Sbjct: 68 KRNGRKEIKPRKHTMSLQDNRIIVSLNCSNP-CLEYFKKFI 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,060
Number of Sequences: 27780
Number of extensions: 347672
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -