Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j11
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 452 KELSRVIGGINTTVSENEGNLVLGVK 529
           K  SR++GG NT +  NE  ++ G+K
Sbjct: 156 KNPSRIVGGTNTGI--NEFPMMAGIK 179


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 120 ISCWFAFAWTVPILVF*LFY 61
           ++C F +A+ +P++   LFY
Sbjct: 221 VTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 120 ISCWFAFAWTVPILVF*LFY 61
           ++C F +A+ +P++   LFY
Sbjct: 221 VTCIFIWAYVIPLIFIILFY 240


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 474 PMTRDSSLT*NVTSSPSGVDPGPDDTSMNTPMSRKQPIESRARRTL*ALTITSSKSV 304
           P +RD S T N + +    D GP+   +N   +  Q I+    R L   + T+S  V
Sbjct: 85  PDSRDKSNTSNTSKTIILSDKGPEGIQINA--TELQKIKLEIHRDLPGKSTTTSVEV 139


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 30   HPTNNQPLNTHKTIKKPKWA-LSTRRQTSTI 119
            HPT+N P++ +    KP++    T + +ST+
Sbjct: 1389 HPTDNAPIHGYTIHYKPEFGDWDTAQISSTV 1419


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 474 PMTRDSSLT*NVTSSPSGVDPGPDDTSMNTPMSRKQPIE 358
           P +RD S T N + +    D GP+   +N    +K  +E
Sbjct: 85  PDSRDRSNTSNTSKTVILSDKGPEGIQINATELQKIKLE 123


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 531 IFTPKTKFPSFSLTVVFI 478
           +FTP  + P+  LT VF+
Sbjct: 63  LFTPGQELPARGLTAVFL 80


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 132 PESPISCWFAFAWTVPILV 76
           P SP++ W++ A + P LV
Sbjct: 426 PISPLNDWYSLASSWPALV 444


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 64  KQLKNQNGHCPREGKPARYW 123
           +Q + Q  H P E +PA  W
Sbjct: 455 QQQQQQQQHWPMEEEPAASW 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,483
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)