Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j11
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ... 29 2.1
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ... 29 2.1
At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein ... 29 2.8
At5g27920.1 68418.m03354 F-box family protein contains similarit... 29 3.8
At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family... 29 3.8
At4g19650.1 68417.m02887 mitochondrial transcription termination... 28 5.0
At3g54260.1 68416.m05997 expressed protein various predicted pro... 28 5.0
At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family... 28 5.0
At1g73140.1 68414.m08458 hypothetical protein 28 6.6
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 27 8.7
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 27 8.7
At1g14150.2 68414.m01672 oxygen evolving enhancer 3 (PsbQ) famil... 27 8.7
At1g14150.1 68414.m01673 oxygen evolving enhancer 3 (PsbQ) famil... 27 8.7
>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 623
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = -2
Query: 170 PFRLALQKQTDHRQSRQYRAGLPSRGQCPF-----WFFNCFM 60
P + L T H Q R G PS CP W+ CFM
Sbjct: 292 PDVIHLTHLTTHNSIYQMRLGFPSLSSCPLWSRPPWYLTCFM 333
>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 627
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = -2
Query: 170 PFRLALQKQTDHRQSRQYRAGLPSRGQCPF-----WFFNCFM 60
P + L T H Q R G PS CP W+ CFM
Sbjct: 292 PDVIHLTHLTTHNSIYQMRLGFPSLSSCPLWSRPPWYLTCFM 333
>At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 365
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 410 PGSTPEGLEVTFQVKELSRVIGGINTTVSENEGNLVLGVKMPNIAGRGEK-LQA-EYSMG 583
P + P+G++ S + I T N G+L+ V IAGR K +Q E S+G
Sbjct: 268 PKTRPDGIKGVLTASTSSTALESIETDQGRNRGSLIAVVLCRVIAGRVHKPMQTFENSLG 327
Query: 584 YRSTSNFNVTATK 622
+ S F+ A K
Sbjct: 328 F---SEFDSLALK 337
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 347 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGNLVLGV 526
+ L S+GC+ + +D++ G GLE + L R+ G+ T +S+ +G +G
Sbjct: 393 KGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISD-KGIFHIGS 451
Query: 527 K 529
K
Sbjct: 452 K 452
>At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein Similar to GI:4585976;
GI:11994416; GI:4835763; GI:9757735 from [Arabidopsis
thaliana]
Length = 336
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 45 QPLNTHKTIKKPKWALSTRRQTSTILATLAVVCLF 149
Q L K I PKW + T + + L V+CLF
Sbjct: 22 QELPACKPILTPKWVILTFLVSGVVFIPLGVICLF 56
>At4g19650.1 68417.m02887 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 557
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 497 ENEGNLVLGVKMPNIAGRGEKLQAEYSMGYRSTSNFNVTATKPYPHKPLVPIVSASVYQ 673
EN +V +K GRG++LQ + ++ N+NV T+ H P++ +S V +
Sbjct: 415 ENSDEMVKALKQ--FRGRGDQLQERFDCLVKAGLNYNV-VTEIIRHAPMILNLSKDVIE 470
>At3g54260.1 68416.m05997 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 379
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 91 CPREGKPARYWRLWRW 138
C R G+P Y++ WRW
Sbjct: 80 CQRNGRPDSYYQKWRW 95
>At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein similar to GI:4966357;
GI:4585976; GI:11994416; GI:9757735 from [Arabidopsis
thaliana]
Length = 350
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 9 KIPNYSFHPTNNQPLNTHKTIKKPKWALSTRRQTSTILATLAVVCLF 149
K P YS Q L K I P+W + T + L V+CLF
Sbjct: 26 KRPKYSRF--TQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLF 70
>At1g73140.1 68414.m08458 hypothetical protein
Length = 413
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 91 CPREGKPARYWRLWRW 138
C R G+P Y++ WRW
Sbjct: 88 CQRNGRPDSYYQNWRW 103
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 377 DIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGN 511
++ F DV GS P G+ + + ++ IGG T ++ G+
Sbjct: 444 EVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLGS 488
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 122 GDSGGGLFVFEEPVEMGEEPIPK 190
GD GGG+FV+ + E+P+ K
Sbjct: 555 GDGGGGIFVWSTTFPLEEQPLRK 577
>At1g14150.2 68414.m01672 oxygen evolving enhancer 3 (PsbQ) family
protein extrinsic pII protein; contains Pfam profile
PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
Length = 162
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 27 FHPTNNQPLNTHKTIKKPKWALSTRRQTSTILATLAVVCLFLKS---QSKWARNQY 185
+H NQP + +P+ + TRR+T T L T V+ S Q KW +
Sbjct: 19 YHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSF 74
>At1g14150.1 68414.m01673 oxygen evolving enhancer 3 (PsbQ) family
protein extrinsic pII protein; contains Pfam profile
PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
Length = 190
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 27 FHPTNNQPLNTHKTIKKPKWALSTRRQTSTILATLAVVCLFLKS---QSKWARNQY 185
+H NQP + +P+ + TRR+T T L T V+ S Q KW +
Sbjct: 19 YHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSF 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,053
Number of Sequences: 28952
Number of extensions: 323815
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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