Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j09
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)                     28   8.6  

>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 238 NDNNEIVNPLNFSNCFLLSAMTEYTNHITRN 146
           +D + ++NP NFSNC  L  +T Y      N
Sbjct: 522 SDISSVINPNNFSNCSKLFKVTAYVRRFVHN 552


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 238  NDNNEIVNPLNFSNCFLLSAMTEYTNHITRN 146
            +D + ++NP NFSNC  L  +T Y      N
Sbjct: 1089 SDISSVINPNNFSNCSKLFKVTAYVRKFMHN 1119


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 700 LTCNKKCKSLKTLKXQRL*VCIYSEGAPHW 611
           LTC   C S+  LK  RL    Y+E  PHW
Sbjct: 640 LTCTA-CVSILFLKTNRLVNVFYTEPVPHW 668


>SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)
          Length = 310

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 256 IRVVIPNDNNEIVNPLNFSNCFLLSAMTEYTNHI 155
           I ++I N NNE+V+  NF   FL      Y + I
Sbjct: 128 INLIILNGNNEVVSQCNFGKTFLSWVAGGYLDEI 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,628,973
Number of Sequences: 59808
Number of extensions: 462880
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)