Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j09
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D55636-1|BAA21748.1|   56|Homo sapiens smallest subunit of ubiqu...    37   0.082
BC003594-1|AAH03594.1|   56|Homo sapiens ubiquinol-cytochrome c ...    37   0.082
BC000462-1|AAH00462.1|   56|Homo sapiens ubiquinol-cytochrome c ...    37   0.082
AC005943-2|AAC72105.1|   39|Homo sapiens smallest subunit of ubi...    36   0.19 

>D55636-1|BAA21748.1|   56|Homo sapiens smallest subunit of
           ubiquinol-cytochrome c reductase protein.
          Length = 56

 Score = 36.7 bits (81), Expect = 0.082
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 183 LSKKQLEKLSGFTISLLSFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEE 329
           L  +  E +  +  +  ++G    +G+V+ TDW+ ++ ++PY N KF++
Sbjct: 6   LGPRYRELVKNWVPTAYTWGAVGAVGLVWATDWRLILDWVPYINGKFKK 54


>BC003594-1|AAH03594.1|   56|Homo sapiens ubiquinol-cytochrome c
           reductase, 6.4kDa subunit protein.
          Length = 56

 Score = 36.7 bits (81), Expect = 0.082
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 183 LSKKQLEKLSGFTISLLSFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEE 329
           L  +  E +  +  +  ++G    +G+V+ TDW+ ++ ++PY N KF++
Sbjct: 6   LGPRYRELVKNWVPTAYTWGAVGAVGLVWATDWRLILDWVPYINGKFKK 54


>BC000462-1|AAH00462.1|   56|Homo sapiens ubiquinol-cytochrome c
           reductase, 6.4kDa subunit protein.
          Length = 56

 Score = 36.7 bits (81), Expect = 0.082
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 183 LSKKQLEKLSGFTISLLSFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEE 329
           L  +  E +  +  +  ++G    +G+V+ TDW+ ++ ++PY N KF++
Sbjct: 6   LGPRYRELVKNWVPTAYTWGAVGAVGLVWATDWRLILDWVPYINGKFKK 54


>AC005943-2|AAC72105.1|   39|Homo sapiens smallest subunit of
           ubiquinol-cytochrome c reductase protein.
          Length = 39

 Score = 35.5 bits (78), Expect = 0.19
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 234 SFGMTTLIGMVFLTDWKPVVTYIPYYNTKFEE 329
           ++G    +G+V+ TDW+ ++ ++PY N KF++
Sbjct: 6   TWGAVGAVGLVWATDWRLILDWVPYINGKFKK 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,296,090
Number of Sequences: 237096
Number of extensions: 2161553
Number of successful extensions: 7542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7542
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)