Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j09
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   1.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 6  LRHTWCNSIDLS*LFYVFVQFIFNS 80
          L +  C S++LS LF++FV   F S
Sbjct: 24 LHNNMCTSLNLSNLFWLFVGTYFPS 48


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 303 PYYNTKFEEVKKK 341
           PY  T+FEE+KK+
Sbjct: 88  PYSETRFEEIKKE 100


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 303 PYYNTKFEEVKKK 341
           PY  T+FEE+KK+
Sbjct: 104 PYSETRFEEIKKE 116


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 303 PYYNTKFEEVKKK 341
           PY  T+FEE+KK+
Sbjct: 161 PYSETRFEEIKKE 173


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 268 FLLIGNLLLPTSLTITL 318
           FLL+  ++ PTSLT+ L
Sbjct: 282 FLLLAEIIPPTSLTVPL 298


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 303 PYYNTKFEEVKKK 341
           PY   +FEE+KK+
Sbjct: 161 PYSEARFEEIKKE 173


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 268 FLLIGNLLLPTSLTITL 318
           FLL+  ++ PTSL I L
Sbjct: 295 FLLLAEIIPPTSLAIPL 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 268 FLLIGNLLLPTSLTITL 318
           FLL+  ++ PTSL + L
Sbjct: 286 FLLLAEIIPPTSLVVPL 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -1

Query: 122 LYDH*HSFSDYSKIRIENKLNKYVKELR 39
           L DH H F++  + ++E  + +  ++L+
Sbjct: 127 LKDHQHQFAELGRKKLEQAIQQLQEQLQ 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,855
Number of Sequences: 438
Number of extensions: 4295
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)