Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j08
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    45   9e-06
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   1.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   9.9  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   9.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
 Frame = +3

Query: 354 WKKYHRLNVIYAFIDELERDYPAICTVSVIGQSVEGRDIKMLKISN---SD----ARNS- 509
           +K Y  L  I +++  +   Y  +  +  +G + EGR I  LK++    SD     RN  
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKK 239

Query: 510 AIWLDASIHSREWISTAVVTYIADYIARNFHS---LPTSITNKDWHIVPILNPDGYE 671
            I +    H+REWI    V Y A  +   + S   +   +   +W  +P+LN DGYE
Sbjct: 240 VIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYE 296


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 261 KKTKPGTVIPRGLKQIVPTNKPKKRKVKLMNWKKYHRLNVIYAFIDELER 410
           KKTK G  + +     +  +  K  K + + W ++HR NV  A ID LE+
Sbjct: 71  KKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHR-NVERAKIDHLEQ 119


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +3

Query: 369 RLNVIYAFIDELERDYPAICTVSVIGQSVEGRDIKMLKISNSDARNSAIWLDASIHSREW 548
           R  V + FI+  +   P ICT+ +   +  G  ++   +S    ++      + I + EW
Sbjct: 17  RFLVKFCFIEYQDSQEPCICTIQLFSGNESGSLMQKCFVSKIPNKSLLPTELSKISTHEW 76

Query: 549 ISTAV 563
           +   V
Sbjct: 77  LDFGV 81


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 257 RKENKTRHSHTKRIKTNCSNE*TKEKKSKINELEEIP 367
           +K + +  S T+ IK+  +N   K   S INE ++IP
Sbjct: 859 KKLSHSSASSTRSIKSLLTNANQKHIHSSINETDDIP 895


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 546 WISTAVVTYIADYIARNFHSLPTSITNKDWHIVPIL 653
           WI+TA+V Y+   +   F+     I +K  H + IL
Sbjct: 114 WITTAIVGYLFKIVRAPFYIYVLLILSKRLHSIFIL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,072
Number of Sequences: 5004
Number of extensions: 50325
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)