Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j07
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   2.3  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.2  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   6.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.1  

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 494 ANLNFASTFFFWKNFFILSAILNSWSVLFR*LQF*YTLFELF 369
           A L F S+ FF  + FI  +   S  +LF    F  TLF +F
Sbjct: 293 AGLQFVSSCFFLSSLFISPSNKESLVILFAAPVFLITLFAMF 334


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 111 FAKDFFESCFSSLPIDNFPKS-FLNLD 188
           F K FFE  F  +P +NF +S F N D
Sbjct: 233 FRKFFFELGFEEMPTNNFVESGFWNFD 259


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 461 WKNFFILSAILNSWSVLFR*LQ 396
           W+N+ ++S  +N WS + R L+
Sbjct: 628 WENYMLISVDVNKWSEVIRALR 649


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 75   EALYLQIEDTLSFAKDFFESCFSSLPIDNFPKSFLNLDQFTFY 203
            E L   + D  S   +    C+ +LPI+++ KS   +D + F+
Sbjct: 996  ELLIKVLSDLGSTEDEEISDCYLALPIEDYAKSLTEVD-YNFF 1037


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,820
Number of Sequences: 5004
Number of extensions: 39939
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)