Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j07
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)                 27   9.7  

>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 348 PATSATIEQLKES--VSKLKLPKEHTPRI*NGRQDKKVLPEEES 473
           P  + T E+ KE   V++ + PKE TP++ +  ++ +   EEES
Sbjct: 215 PEANKTPEEPKEDEKVTEEETPKEETPKVEDAPEEVEAPKEEES 258


>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
          Length = 833

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 123 FFESCFSSLPIDNFPKSFLNLDQFTFYG 206
           F+ + F+ +P+DN  +  LN++Q +  G
Sbjct: 447 FYSTIFTPIPLDNSQEQILNINQASIVG 474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,931
Number of Sequences: 59808
Number of extensions: 261516
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)