Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j07
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45595.1 68418.m05602 hypothetical protein                          29   2.0  
At4g18690.1 68417.m02764 hypothetical protein similar to tumor-r...    29   2.0  
At5g16350.1 68418.m01911 expressed protein                             28   4.5  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    27   7.9  

>At5g45595.1 68418.m05602 hypothetical protein
          Length = 143

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 610 PQLQLCFPLKALIF*QLGRLFSQNRDCLSLTQSIYDLDRPI*ILHRLSSSGR 455
           P LQ  F  + L+    G + SQNR C   TQ + ++ + +   H L++ G+
Sbjct: 10  PTLQRPFYTQTLLEWIYGNVGSQNRKCRDRTQFVKEISKDVYQAHCLANGGQ 61


>At4g18690.1 68417.m02764 hypothetical protein similar to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 368

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 113 KRQSILDLKIQSFV*SVIKNSVVENGHYIGFL-YKLP 6
           KR S+L LK+ SF   +IK  +V  G+Y   L  KLP
Sbjct: 276 KRSSLLMLKLHSFYTKIIKTCMVNFGNYFERLPVKLP 312


>At5g16350.1 68418.m01911 expressed protein
          Length = 488

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 415 CSLGS-FSFDTLSLSCSIVADVAGFMNLSEILLPYTRHDRQ 296
           C  G+ FSF  L LS S+  D   ++N S+ ++  T+H  Q
Sbjct: 327 CRWGNYFSFIILPLSISLETDPLVYLNKSKAMMARTKHSYQ 367


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 488 LNFASTFFFWKNFFILSAILNSWSVLFR*LQF*YTL 381
           ++F   FFF+ + F+LS+ LNS  VL   L F Y++
Sbjct: 12  VSFFFFFFFFSSLFLLSSALNSDGVLL--LSFKYSV 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,487
Number of Sequences: 28952
Number of extensions: 193683
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)