Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j06
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EDI7 Cluster: Chromosome undetermined scaffold_9, who...    35   2.0  
UniRef50_Q5D970 Cluster: SJCHGC08915 protein; n=1; Schistosoma j...    34   2.6  
UniRef50_A2D8C6 Cluster: Dynein heavy chain family protein; n=2;...    33   4.6  
UniRef50_Q1FPE1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A0EDI7 Cluster: Chromosome undetermined scaffold_9, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_9, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1844

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 206  NDKILSNSSNFEHL*YQELRCSN*T*ALYHRFIHDTLPSRNNLYRRKIPRVFGN 367
            N  +L+N SN +   YQ  +C     A Y+R  HD L   NNLYR+   + FG+
Sbjct: 1776 NHNLLNNQSNSDWNVYQCNKCDMWMIA-YNRQSHDLLVIMNNLYRKNHNKFFGD 1828


>UniRef50_Q5D970 Cluster: SJCHGC08915 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC08915 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 251

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 222 PTLRTLNTYNIKN*DAQIKPKPYTTDSSTILC 317
           PTL T N++N  N   +I+PKP    SSTI C
Sbjct: 78  PTLITTNSFNCLNESNRIRPKPLGLSSSTIPC 109


>UniRef50_A2D8C6 Cluster: Dynein heavy chain family protein; n=2;
           cellular organisms|Rep: Dynein heavy chain family
           protein - Trichomonas vaginalis G3
          Length = 3872

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 256 RTEMLKLNLSPIPQIH-PRYFAV*EQPL*TKNPTCFRKYLVMFFFL**RTKYNLNSETSV 432
           R E L+ +++  P  H PR+FA   Q L T   T   KYL+ F       KYNL+S    
Sbjct: 148 RFETLRTSITQYPMFHNPRFFASTVQILRTTCNTIINKYLLPFIQ---EKKYNLDSFIDT 204

Query: 433 CDRNSSII 456
            + N  ++
Sbjct: 205 TESNFKLL 212


>UniRef50_Q1FPE1 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 206

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 272 LSISVLDIIGVQSSKSWTIFYHSLERNRCYLVN*VGS*MFLTGLFLIISVF 120
           LSI+V+ +  +  S  W +   S+  +  Y V  +G+ M   G+ L++S+F
Sbjct: 54  LSIAVIGLFSIFGSMGWNMAIQSMNVSSTYPVTLLGAMMISIGVVLVMSIF 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,249,477
Number of Sequences: 1657284
Number of extensions: 10120155
Number of successful extensions: 18277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18273
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)