Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j06
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006809-2|AAF59625.1|  160|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC006809-2|AAF59625.1|  160|Caenorhabditis elegans Hypothetical
           protein Y5H2A.1 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 207 MIKYCPTLRTLNTYNIKN*DAQIKPKPYTTDSSTILCRLGTT 332
           +I +CPT   +    +    + I   P  T S+TI+C LGTT
Sbjct: 67  LISWCPTAEEVGVTYVVGLLSIIPLLPSDTCSTTIVCPLGTT 108


>Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical
           protein C04B4.2 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 656 RSKLKSQMRSARKLLDTHSWLVIVSSKMT 570
           R +  S M S R+++D HSW   +SS  T
Sbjct: 248 RQRTGSDMNSFREIIDFHSWAFTLSSHGT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,127
Number of Sequences: 27780
Number of extensions: 262380
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)