Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j06
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.64 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.64 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.64 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.64 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 EGMIKYCPTLRTLNTYNIKN 260
           EG ++  P+L +LN Y IKN
Sbjct: 222 EGTLRKSPSLTSLNAYLIKN 241


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 EGMIKYCPTLRTLNTYNIKN 260
           EG ++  P+L +LN Y IKN
Sbjct: 222 EGTLRKSPSLTSLNAYLIKN 241


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 EGMIKYCPTLRTLNTYNIKN 260
           EG ++  P+L +LN Y IKN
Sbjct: 273 EGTLRKSPSLTSLNAYLIKN 292


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 EGMIKYCPTLRTLNTYNIKN 260
           EG ++  P+L +LN Y IKN
Sbjct: 222 EGTLRKSPSLTSLNAYLIKN 241


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 422 KPQCATGTAASSQELEKDNNLLCAFRNL 505
           KP+ + G  A    +E+ NN+  +F  +
Sbjct: 553 KPETSKGINAEPSNIEESNNMTDSFTRI 580


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 218 LSNSSNFEHL*YQELRCSN 274
           LSN+ N+ +  Y++L C+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 218 LSNSSNFEHL*YQELRCSN 274
           LSN+ N+ +  Y++L C+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 218 LSNSSNFEHL*YQELRCSN 274
           LSN+ N+ +  Y++L C+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,610
Number of Sequences: 438
Number of extensions: 3254
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)