Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j06
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf...    29   2.1  
At5g42620.1 68418.m05188 expressed protein                             28   6.3  

>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 377 ITRYFRKHVGFFVYKGCS*TAKYRG*ICGIGLRFNLSISVLDIIGVQ-SSKSWTIFYHSL 201
           I+ +F  H+G     G +    + G I G+ +   LS+ +  I G    +K WT+  H+ 
Sbjct: 30  ISMWFLSHLGKVELAGGALAMGF-GNITGVSVLKGLSVGMDPICGQAFGAKRWTVLSHTF 88

Query: 200 ERNRCYLV 177
           ++  C L+
Sbjct: 89  QKMFCLLI 96


>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 487 MRIPKFNLEIICTSLHLYCYNQIVLSLIVILLETITNHECVSNNFR 624
           +R P FN E+IC + H  C   +V  L         N +CV    R
Sbjct: 574 IRFPGFNGELICPAYHELCSTSVVSVLGQCPNSCNFNGDCVDGKCR 619


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,378,268
Number of Sequences: 28952
Number of extensions: 228027
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)