Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j03
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 32 0.32
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.7
10_08_0520 - 18495118-18498237 29 2.3
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 2.3
01_01_1127 + 8930593-8932681,8932812-8933401 29 2.3
09_04_0500 - 18120287-18122233 29 3.0
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 4.0
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 5.3
05_06_0224 + 26546066-26546830 28 5.3
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 28 5.3
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 27 7.0
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265... 27 7.0
04_01_0051 - 542615-544066 27 7.0
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 27 9.2
08_02_1080 - 24197514-24199415 27 9.2
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 27 9.2
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -1
Query: 425 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 315
++T T + +S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 215 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 117
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 343 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 444
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 105 GLVVLGPEDWSEISVLNWSQKIS 37
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 343 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 444
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 298 AVSVPERRSSDEYGRRARVELRSASWHR 381
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 384 TAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRSSHLGM 259
TA P G+K ++ ++ + AS+ GDS+ +NAH H M
Sbjct: 174 TAAPLAGSKDDSAVPGVVEKVASVDGGDSM-ANAHHHHHAMM 214
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 266 WVWRLTDHLTTASNGSDSSSRGT 198
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>05_06_0224 + 26546066-26546830
Length = 254
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 316 RRSSDEYGRRARVELRSASWHRGLQELWRLFAVVVRMLGNVGDWPL 453
RR D YG + + + H G+++ + A++ R LG W +
Sbjct: 23 RRVVDMYGHHVGFKAKVVALHGGIRQARAVHAILSRQLGGEKKWEI 68
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 281 WAFEVTL--SPFPSDAPLTSMDV-ERALSFAPRRGTAVFKSSGGCSLSW 418
+ FE TL PF + + DV +A+ A A F S GGC++SW
Sbjct: 54 FTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -3
Query: 471 TASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGN 307
TA N +++ Q+P H E ELL T VP L T++ VRG+ GN
Sbjct: 105 TAGVNTAFYLSNTEQYPGHHDEIDMELLGT-VPGEPYTL---QTNVYVRGSGDGN 155
>07_01_0361 -
2655442-2655706,2656339-2656466,2658428-2658438,
2659586-2659704,2659746-2659906,2660115-2660132
Length = 233
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 358 LRSASWHRGLQELWRLFAV-VVRMLGNVGDWPLNIVTR 468
LRS W + + LW F+V +V L +V W L + +R
Sbjct: 58 LRSFEWLKQIVALWSQFSVNLVITLEDVAPWLLTVASR 95
>04_01_0051 - 542615-544066
Length = 483
Score = 27.5 bits (58), Expect = 7.0
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = -1
Query: 371 DAERSSTRA-----LRPYSSEERRSGTETA*LQTPIAVLIWVWRLTDHLTTASNGSDSSS 207
DAE SS L P +S + SGT A L TP+ + WR D+ TTA+ S
Sbjct: 62 DAEISSNNGSTILHLTPAASSNK-SGT--ALLPTPVTL----WRRLDYQTTAAQPGSYSK 114
Query: 206 RGTEYSTTCRTARRAYSKARM--ACDTGGKASWLLKAWLF*VLKT 78
+ +T+ T R Y+ A+ A D A+ L F ++ T
Sbjct: 115 QDASLNTSF-TMRVQYANAKYSPADDAAAAAAGLNNGLAFVIVPT 158
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 206 GCYYRCR*MR*LSDQ*AAIPK*ELRWAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTAV 385
GC+ R + LS + + RW + LS DA LT ++ AL+ R+ TAV
Sbjct: 276 GCFRRIKIWSSLSSSSSCSRRSAARWRRQGLLSQLAVDATLTQFAIDAALA---RKSTAV 332
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 298 AVSVPERRSSDEYGRRARVELRSASWHR 381
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = -3
Query: 486 KNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGN 307
K V T ++R +A+ +Q+ +++S Q + + + ++ RSTS V+ G+
Sbjct: 390 KFVVSTRKTPLERRLAN-AQYSSNNSPQDGSS-DSKISKTLDRILGRSTSTSVQNNQSGD 447
Query: 306 GDSVTSNAHRSSHLG 262
GD TS+ +S+LG
Sbjct: 448 GDVNTSSNKTTSNLG 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,383
Number of Sequences: 37544
Number of extensions: 255821
Number of successful extensions: 837
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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