Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10j03
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 29 2.0
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 29 2.0
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 28 3.6
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 28 3.6
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 28 3.6
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 27 6.2
Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical pr... 27 8.2
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 27 8.2
U50301-2|AAM29675.1| 362|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 296 TLSPFPSDAPLTSMDVERALSFAPRRGTA 382
T SP PSD S+DV+R L+F R A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 296 TLSPFPSDAPLTSMDVERALSFAPRRGTA 382
T SP PSD S+DV+R L+F R A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 242 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 117
++ S G SSSRG+ Y T R+++R+ S++R +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
ZK370.4b protein.
Length = 1353
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 352 VELRSASWHRGLQELWR 402
VE R+ASW G+ LWR
Sbjct: 993 VETRAASWFNGMSSLWR 1009
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
ZK370.4a protein.
Length = 1342
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 352 VELRSASWHRGLQELWR 402
VE R+ASW G+ LWR
Sbjct: 982 VETRAASWFNGMSSLWR 998
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 499 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALY 341
N+ENEK R+ E + R E +QR + A +R E + A Y
Sbjct: 155 NSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANY 207
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 473 EQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTET 300
E+R +L+GQSP F +R + R R +A++ +A+ E R+ +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437
>Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical
protein T07G12.2 protein.
Length = 544
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 287 FEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSGGCSLSWFGCWEMSAT 445
F V L F P SM+ ++A A + + F G ++WF CW ++ T
Sbjct: 188 FVVLLEEFEVPMPAFSME-KKAFYTAKMKIFSQFPYLLGIMIAWFVCWILTIT 239
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical protein
F41H10.3b protein.
Length = 1005
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 491 KRKTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPY-SSEERR 315
+R P + +L+ + T P ++ NS QS RPR ++ A P ++ +RR
Sbjct: 931 RRWDPLPKSSGVLAHSNSTIPYVQRVPNNSTQSDFRPRSFSQNSVASPAPAPVPNAIKRR 990
Query: 314 SG 309
G
Sbjct: 991 EG 992
>U50301-2|AAM29675.1| 362|Caenorhabditis elegans Hypothetical
protein F20D6.5 protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 313 ERRSSDEYGRRARVELRSASWHRGLQELWRLFAVVV 420
E+ Y RA V+ +S +W Q+L RLF +
Sbjct: 244 EKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,752
Number of Sequences: 27780
Number of extensions: 194898
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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