Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j02
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.58 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   1.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   5.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   9.4  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    24   9.4  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 116 LKGLATIHKF--TKWVIHVDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESL 289
           L+GLA +H+   +   +H+D + +         K  DF  T TL ++  S+  N+N +S+
Sbjct: 359 LEGLAELHRLGISHKSLHLDNVVLFHSGHRTFAKLMDFGFTRTLRDMNASHPFNINSQSI 418

Query: 290 T 292
           T
Sbjct: 419 T 419


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  HPYHTRCDANTISQRTCDNP 138
           HP H+  D N+ SQR  D+P
Sbjct: 381 HPIHSSVDNNSFSQRDFDSP 400


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 394 GKRCVFGKCNKNNL 435
           G+R   GKCN NNL
Sbjct: 158 GQRAYIGKCNMNNL 171


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 40   NGFAGVSYCPRLM 78
            +GF G +YCPR+M
Sbjct: 1334 DGFPGRAYCPRMM 1346


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 178 CDCNGDLVLDEETGLC 225
           CDC+  L LDEE+ +C
Sbjct: 119 CDCDTWLQLDEESQVC 134


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 227 LTWTLANLKMSNLKNLNQESLTGYERI 307
           L   L N++  N+K+LN E +  YE++
Sbjct: 34  LNQNLYNIETENVKDLNIEDVDYYEKL 60


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 7   VFTFVLRGRHHNGF-AGVSY 63
           ++T+ L   HHNGF  G+ Y
Sbjct: 234 IYTYHLTNTHHNGFECGIYY 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,264
Number of Sequences: 5004
Number of extensions: 35189
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)