Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j01
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    29   0.71 
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    29   0.71 
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    26   3.8  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   3.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   6.6  

>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 575 AMKNNELTK----KFRL*IFSSASHFVLPFYLSVTFHFDNSSQR 456
           ++KN  L K     F+L IF    H   P YL +  HF   S++
Sbjct: 128 SLKNERLLKYNPLNFKLLIFDEVHHMASPSYLRILEHFGAESEK 171


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 468 LFTTIIKYTQINNPTTATTVCAIG-TEQVMLIFVN 367
           L+T I+ Y Q NN    T  CA+  T++ +L F N
Sbjct: 92  LYTQIVPYLQKNNDDAPTIRCALNCTQEFLLSFSN 126


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 76  LHQLKMGNGAHSNFGYTE 129
           +H+L++    HSNFGY+E
Sbjct: 262 MHELELLEEKHSNFGYSE 279


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 157 LVKNNTEGTTQYTQNCYEHRSPF*ADAK*EIVDIW 53
           ++KN+ E T     +  E +SPF +DA  +  D W
Sbjct: 338 ILKNDQETTPSTNDSSSETKSPFLSDADLDQQDFW 372


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 199 KIH*VCDSHS*TMAFRYQHYTFNRYLHEKATNSNMV 306
           KIH + D+        YQH   + ++H+  T+SN V
Sbjct: 318 KIHYINDNDPSNSYSSYQHSHVHDFIHKNNTHSNRV 353


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 345 TSTVRAVNAAAYMNHVAVCGFFMQIPIKSIMLVTKSHSSAMTITYLMYF 199
           +STV  +   ++   V++C       + S +L TK+HS A+   + +YF
Sbjct: 294 SSTVAIMYVYSWTGTVSLCNL-----VSSWILNTKTHSYALVTVFKLYF 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,106
Number of Sequences: 5004
Number of extensions: 52398
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)