Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j01
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0808 + 7418878-7420476                                           34   0.10 
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    27   9.0  

>12_01_0808 + 7418878-7420476
          Length = 532

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = -1

Query: 381 LIFVNVTIAMVSTSTVRAVNAAAYMNHVAVCGFFMQIPIKSIMLVTKSHSSAMTIT 214
           L F N++ A+  T ++ +    +++N+  +CGF +Q+P +++   T+S  +  T T
Sbjct: 255 LRFNNLSGAIPQTGSLASQGPTSFLNNPGLCGFPLQVPCRAVPPPTQSPPAPTTTT 310


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 395 VPIAQTVVAVVGLLIWVYLIIVVKSYQNEM 484
           VP+A +VV +V +++W Y  + VK Y+ E+
Sbjct: 509 VPVAMSVVLMVVMIVWHY--VHVKRYKYEL 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,523
Number of Sequences: 37544
Number of extensions: 302332
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)