Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j01
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)        29   2.3  
SB_54170| Best HMM Match : Coronavirus_NS4 (HMM E-Value=6.1)           28   5.3  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.0  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -1

Query: 468  LFTTIIKYTQINNPTTATTV-CAIGTEQVMLIFVNVTIAMVSTSTVRAVNAAAYMNHVAV 292
            L TT++  T     T ATT+  A+      ++    T+A  +T+  +A    A M     
Sbjct: 1105 LKTTVVAVTAAATTTAATTIAAAVTASTASVVTTTATVAAATTTAEKATTTTAAMVKATT 1164

Query: 291  CGFFMQIPIKSIMLVTKSHSSAMT 220
                +     S++  T + ++A T
Sbjct: 1165 TAAAVTASTASVVTKTATVAAATT 1188


>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
          Length = 261

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 342 STVRAVNAAAYMNHVAVCGFFMQIPIKSIMLVTKSHSSAMTITYLMYF 199
           +TV  V  + + NHV  CGFF     +S +L+  + +  +T+  ++ F
Sbjct: 140 NTVPLVLRSDFRNHVWRCGFFHGHNTQSFLLIIVTAAYGLTVALILKF 187


>SB_54170| Best HMM Match : Coronavirus_NS4 (HMM E-Value=6.1)
          Length = 174

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 462 TTIIKYTQINNPTTATTVCAIGTEQVMLIFVNVTIAMVSTSTV 334
           T II  T     TT TT+    T  +++I + +TI +++  T+
Sbjct: 28  TIIIIITTTTTTTTTTTITTTTTTIIIIIVIIITIIIITIITI 70


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 336  VRAVNAAAYMNHVAVCGFFMQIPIKSIMLVT 244
            +RA+N A  + HV  C F     I +IMLVT
Sbjct: 1023 LRAINRAKGLKHVVQCVFVAVKTIGNIMLVT 1053


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,206,873
Number of Sequences: 59808
Number of extensions: 375016
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)