Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j01
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 465  FTTIIKYTQINNPTTATTVCAIGTEQVMLIFVNVTIAMVSTSTVRAV 325
            F T+ K  +++    A+TV      +VML  +  T+A+V    + A+
Sbjct: 1587 FVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVALVVAVVIVAL 1633


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 465  FTTIIKYTQINNPTTATTVCAIGTEQVMLIFVNVTIAMVSTSTVRAV 325
            F T+ K  +++    A+TV      +VML  +  T+A+V    + A+
Sbjct: 1583 FVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVALVVAVVIVAL 1629


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 292 NSNMVHVRGSVHSSDSARANHCYCHVDE 375
           + N      S  SSDSA + + YC  D+
Sbjct: 83  SQNSASTYNSFLSSDSASSGNVYCKCDD 110


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATI 449


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATI 517


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 538 FKFLAVRVILYCLFTFQLHFILITL 464
           +KF A+ V   CL  F L  +L T+
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATI 517


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 529 LAVRVILYCLFTFQLHFILI 470
           L+  V + CLF+ +L+ ILI
Sbjct: 888 LSASVTIACLFSPKLYIILI 907


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 564 IFHSTQKFLAIKTLP 608
           +FH    F+A++T P
Sbjct: 181 LFHDASNFIAMETFP 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,043
Number of Sequences: 438
Number of extensions: 3964
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)