Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j01
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51390.1 68414.m05782 nitrogen fixation NifU-like family prot...    32   0.35 
At3g51390.1 68416.m05629 zinc finger (DHHC type) family protein ...    28   5.7  

>At1g51390.1 68414.m05782 nitrogen fixation NifU-like family protein
           simikar to HIRA-interacting protein 5 (NIFU FAMILY)
           (SP:Q9QZ23)  {Mus musculus}; contains Pfam profile:
           PF01106 NifU-like domain
          Length = 275

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 578 CAMKNNELTKKFRL*IFSSASHFVLPFYLSVTFHFDNSSQRLSSTPKLIIQQQPLLFVQ 402
           C+  ++ L    R    S+A+HF + F  S+T +   +  R SS P   I+Q+  +F+Q
Sbjct: 20  CSPSSSSLLISRRSLFISAATHFPVNFSESITTNASRNCSRSSSFPFNWIEQRRTMFIQ 78


>At3g51390.1 68416.m05629 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 340

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 388 GHAHLRQRDNSNG*HEHCQSCERCRVHEPCCCLWL 284
           G+ H+ Q   +    +HC  C+RC +     C+WL
Sbjct: 165 GYCHVEQPPRT----KHCHDCDRCVLQFDHHCVWL 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,885
Number of Sequences: 28952
Number of extensions: 256038
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)