Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i24
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483     29   3.7  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    29   4.9  
08_02_0774 - 21047696-21048889                                         28   6.4  
10_08_0736 + 20205934-20206551,20207258-20207426,20207562-202076...    28   8.5  
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540...    28   8.5  
10_08_0331 - 16831646-16834756                                         28   8.5  
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430...    28   8.5  

>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
          Length = 475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 385 KVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQS 534
           K +  +  E  R  A CL+ T +LC L  +    T ++S  FSD+ A ++
Sbjct: 220 KQLRYLILEQCRIGALCLAGTTQLCSLAITDCSWTPQSSVAFSDMPALRT 269


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 163  ESSDLCMCVA---SPYSLNYIIIPSNILENAP*IDFLIWI*C 47
            +SS  C  V    SP S  YI+ P ++L  AP  DF  ++ C
Sbjct: 934  DSSSCCSSVKYNKSPCSNQYIVPPESVLSVAPDFDFCSFLEC 975


>08_02_0774 - 21047696-21048889
          Length = 397

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/98 (24%), Positives = 40/98 (40%)
 Frame = +1

Query: 295 ATVFVIVLLSYLIPDVSQKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCS 474
           A + ++ LLS  +P V+     + E + + K +    TE+  A+A   SAT  +      
Sbjct: 252 AGITILPLLSKTMPSVT---FTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSMAYAAAR 308

Query: 475 VLDSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLG 588
            ++S+        DV  C      +T      S  KLG
Sbjct: 309 FVESSLRALAGDPDVYECTFVQSELTELPFFASRVKLG 346


>10_08_0736 +
           20205934-20206551,20207258-20207426,20207562-20207692,
           20208100-20208144,20208145-20208939,20209081-20209128,
           20209504-20209620,20210087-20210161
          Length = 665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
 Frame = +1

Query: 166 SRHPPFQQTSQTSELRDTQKLYKMMMQCLGAVYSAINVNYLA--LATVFVIVLLSYLIPD 339
           SRH           L   Q L + M +C G V   + VN  A  LAT  +   +S L  D
Sbjct: 143 SRHASSYSAPPAGWLGSVQPLCRGMRRCRGLVLGIVGVNAAARCLATRSLAFSMSVLYFD 202

Query: 340 VSQKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSN 504
              +  AN + K    +  +    ++      L+A+D L  L C++ + TT   N
Sbjct: 203 PLHE--ANGKTKRPSILFPSAARRMDTLN-DLLTASD-LVSLHCALTNDTTHILN 253


>10_08_0583 -
           18952168-18952263,18953663-18953740,18954006-18954081,
           18954687-18954735,18955271-18955469,18955761-18955799,
           18955800-18956123
          Length = 286

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 421 AEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQSYCMHI 549
           A AA  S  ++LC + C   D+    S++ S+ +   S C+H+
Sbjct: 49  AAAAADSEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHL 91


>10_08_0331 - 16831646-16834756
          Length = 1036

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 67  SQFKGHFPKCWMEL*YSLMSMARRRTYTGHYSHSRHP 177
           ++F G  P+CW EL   L        ++G    SR P
Sbjct: 663 NRFNGELPRCWWELQALLFMDVSGNGFSGELPASRSP 699


>07_01_0579 +
           4299104-4299652,4300845-4300935,4301018-4301211,
           4301501-4301622,4302378-4302856,4303033-4303334
          Length = 578

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 346 QKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSA 525
           +K H   ELKDV    ++ + +I+  E  C+SA     +L    +   T T +M S +S 
Sbjct: 448 EKRHEELELKDVS---SSFSDKIS--EEICISAAKMANKLEVDAVFVYTNTGHMASLLSR 502

Query: 526 CQSYC 540
           C+  C
Sbjct: 503 CRPDC 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,311,283
Number of Sequences: 37544
Number of extensions: 334823
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)