Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i24
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   0.71 
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    31   0.71 
SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   2.8  
SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)                   29   5.0  
SB_21277| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)                  28   6.6  
SB_9475| Best HMM Match : PAN (HMM E-Value=0.0022)                     28   6.6  
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                28   8.7  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   8.7  

>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 358 ANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDV 519
           A   L+++K+  + I  E+N        A DE+ RLR  + D   +   M +D+
Sbjct: 654 ATKRLREIKENTDRIANEVNSTAVKTHQANDEIARLRKLLNDLLQKADQMKNDI 707


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 322  SYLIPDVSQKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETS 501
            SY  P  S+  +   EL+   K   ++   +   E +  +  DEL RLR  V ++    +
Sbjct: 3195 SYSPPLASKLFNLEYELETANKEKESLEEHVQDLEKSRKNDLDELNRLRKRVKEAEKMHN 3254

Query: 502  NMFSDVSACQSYCMHITR 555
            ++ S+ S C   C    R
Sbjct: 3255 DLKSEASKCSEKCEEFRR 3272


>SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 370 LKDVKKVVN----TITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVS 522
           L+++++  N    T+ T   R  A C   T  L RL   VL+  T +SN+F +V+
Sbjct: 258 LQEIQQATNRMEITLETRQLRTCAVCFDLTVGLLRLLTQVLNRITASSNLFENVT 312


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
 Frame = +1

Query: 175  PPFQQTSQTSELRDTQKLYKMMMQCLGAVYSAINVNYLALATVFVIVLLSYL--IPDVSQ 348
            PPF +  + ++L+    + K   +    +   +   + A+ TV+   +L +   I +V +
Sbjct: 1547 PPFNK--EKNKLKRIIDIIKRAKETKKKMEEILENTFKAMRTVYDDAILQHTKSILEVRR 1604

Query: 349  KIHANNEL----KDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNM 507
            K+  + +L    KD+  V+  + T +  A     +  D   ++   ++D  TET  +
Sbjct: 1605 KLQLSYDLWKKTKDINTVIQALNTVVKGASNYAENIQDVTSKINSPIVDLLTETGEL 1661


>SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 215 TPRNCTK**CSALEPFILLLTSTI*LWQLFS 307
           TPRNC       L P + +L   + LWQLFS
Sbjct: 257 TPRNCGSCPIKELLPLLKVLPFNVLLWQLFS 287


>SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)
          Length = 336

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 NRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQS 534
           N  EA     T+ LCR++C + D T ++ N  +    CQ+
Sbjct: 192 NHVEANFTGVTEVLCRIKCFISD-TCQSYNYDNSSQTCQT 230


>SB_21277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 154 HYSHSRHPPFQQTSQTSELRDTQKLYKMMMQCLGAVYSAINVNYLALATVFVIVLLSY 327
           ++S  R+   Q     +   D +K  K  +  +GA YS  ++    L ++F + L+SY
Sbjct: 73  NFSFIRNAHLQVGKHCAGYDDNRKARKKTVAVIGAAYSGASMAVTNLCSLFYVPLVSY 130


>SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)
          Length = 850

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +1

Query: 382 KKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQSYCMHITRSE 561
           K + N + + ++   AA    T +  RL  +  D     + +    +    +C H+T ++
Sbjct: 529 KMIANQLWSAMHEVAAAAKRVTPKKDRLGTTPADG----NRLLETDTPVAVHCRHVTAAK 584

Query: 562 PMRSEKKLGFLRKIFF 609
            M  E+   FLR I++
Sbjct: 585 RMSDEEPDAFLRPIYY 600


>SB_9475| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 NRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQS 534
           N  EA     T+ LCR++C + D T ++ N  +    CQ+
Sbjct: 494 NHVEANFTGVTEVLCRIKCFISD-TCQSYNYDNSSMTCQT 532


>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 343 SQKIHANNELKDVKKVVNTIT-TEINRAEAACLSATDELCRLRCSVLDSTTETSN 504
           S  ++ N  L  ++++   +  +E+    AAC S+ +++C +    + S + TSN
Sbjct: 552 SSSVNFNEPLSMLQRITEELEYSEVLDKAAACTSSLEQMCYVAAFTVSSYSTTSN 606


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 700 VACITCXXR*RNPCRHTTLLLFPCAKYFCSERISYEESQAFFRCASVLIALCAC 539
           V C +C    R  C    ++ + C    CS R+  + S     C+S  +A C+C
Sbjct: 239 VVCYSC----RVACCSCRVVCYSCRVACCSCRVHMKCSSCRVVCSSCRVACCSC 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,832,555
Number of Sequences: 59808
Number of extensions: 436692
Number of successful extensions: 1086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)