Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i24
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    28   5.8  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical
           protein F56C3.4 protein.
          Length = 344

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 28/122 (22%), Positives = 49/122 (40%)
 Frame = +1

Query: 313 VLLSYLIPDVSQKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTT 492
           +L  Y+       + AN +  D  K  N       +  A  L     L  + CS+   TT
Sbjct: 90  LLEQYIAQTAEPLMQANKKAVDDDKSANNAW----KCVAGVLGVFIVLLVVYCSLAVKTT 145

Query: 493 ETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEITIMSYVYTDSF 672
             +    D S     C  +   EP+   +K+G +  I  P+K +  KE    + ++ +S+
Sbjct: 146 AVAPFIHDASGSSEACGAV---EPINVLEKIGMVVDISLPSKESVKKEPDSTATLFDESY 202

Query: 673 NG 678
           +G
Sbjct: 203 DG 204


>Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical
           protein C54D10.3 protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = +1

Query: 310 IVLLSYLIPDVSQKIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDST 489
           I+L+S L+   S +  AN++   +K  VNT+   I     ACL  T+  C     +  ST
Sbjct: 4   IILVSTLVASASAQTCANDQGPCLKMTVNTMDIYICPEGMACL--TNSTCCEYADIQVST 61

Query: 490 TETSNMFSDVSAC 528
           T T+   S  S C
Sbjct: 62  TTTTTAAS-TSTC 73


>Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1010.7 protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 262 YSAINVNYLALATVFV-IVLLSYLIPDVSQKIHANNELKDVKKVVNTITTEINRAEAACL 438
           YSA+  + +AL +VFV + L++  I  V  ++H  +E++  K     +  E++       
Sbjct: 15  YSAVTFSLIALVSVFVTLPLVNNYIHSVHLRVH--DEMQFCKLSARDVMLEMHNFRQTPN 72

Query: 439 SATDELCRLRCSVLDSTTETSNMFSDVSACQSYCM 543
                   L   +  S+ ET+ +  D +ACQ  C+
Sbjct: 73  K------NLPFFLRRSSNETTRLKRDAAACQGCCL 101


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 414 YFCRYSINNFLDILQLIICMYFLRYVRYEIAQKYYYENSCQS*IVDVNSRINGSKALHH- 238
           YFC+  +   L ++   +  Y L  + YE + K      CQ  +V  +++   +  L   
Sbjct: 11  YFCKIFLLITLVLITCAMVAYGLSKINYEYSSKLMANFKCQKRVVAYSAKFLSNHQLKKL 70

Query: 237 -HFVQFLGVSEF*RLTGLLEW 178
            HF+ F  +S F    G ++W
Sbjct: 71  THFI-FTSISIF--PNGTIKW 88


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = -2

Query: 646 LLLFPCAKYFCSERISYEESQAFFRCASVLIALCACN 536
           +LLF  +K+F SE IS  ++Q FF+  SVLI  C+ N
Sbjct: 228 ILLFAKSKHFRSESISRTQTQIFFQ--SVLI--CSFN 260


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 379 VKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSACQSYC 540
           ++ V  +I T      A+C+ A    C  +C    +TTET      + ACQ  C
Sbjct: 280 IQSVTVSIQTTAQPTTASCIPACQPACTPQCVQAVTTTETC-----IPACQPAC 328


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 4   FSLLTSSAVFVLTFNIKSKLRSQFK 78
           F+LLTS  +F L  ++  K+RS FK
Sbjct: 298 FTLLTSIIIFTLLCSMNGKIRSAFK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,619
Number of Sequences: 27780
Number of extensions: 320358
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)