Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i24
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 225 TVQNDDAVPWSRLF 266
           T+QND+ + W ++F
Sbjct: 99  TLQNDEVLDWKKIF 112


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 691 ITCXXR*RNPCRHTT 647
           +TC     NPC HTT
Sbjct: 425 VTCTNCGPNPCTHTT 439


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 691 ITCXXR*RNPCRHTT 647
           +TC     NPC HTT
Sbjct: 411 VTCTNCGPNPCTHTT 425


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 691 ITCXXR*RNPCRHTT 647
           +TC     NPC HTT
Sbjct: 445 VTCTNCGPNPCTHTT 459


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 691 ITCXXR*RNPCRHTT 647
           +TC     NPC HTT
Sbjct: 394 VTCTNCGPNPCTHTT 408


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 239 IILYSFWVSLSSDV*LVCWNGGWRL 165
           I++  F+V    DV LV  N GW++
Sbjct: 377 ILVPFFYVQEDDDVKLVLLNFGWQM 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,226
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)