Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i24
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot... 29 2.3
At5g62100.2 68418.m07795 BAG domain-containing protein similar t... 28 5.4
At5g62100.1 68418.m07794 BAG domain-containing protein similar t... 28 5.4
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 28 5.4
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 28 7.1
At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ... 28 7.1
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format... 27 9.4
At3g18485.1 68416.m02349 hypothetical protein 27 9.4
At2g34930.1 68415.m04288 disease resistance family protein conta... 27 9.4
>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
similar to pseudouridine synthase 3 [Mus musculus]
GI:9652099; contains Pfam profile PF01416: tRNA
pseudouridine synthase
Length = 446
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +1
Query: 451 ELCRLRCSVLDSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSH 630
EL LR V + E + + S VS+CQ M + + L R++ +KN+
Sbjct: 24 ELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVRRRRVRKGDKNSIP 83
Query: 631 KEITIMSYV 657
+ YV
Sbjct: 84 SHLISKRYV 92
>At5g62100.2 68418.m07795 BAG domain-containing protein similar to
BAG domain containing proteins (At5g07220, At5g52060)
Length = 285
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 499 SNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEITIMSY 654
S MF D+S + I +P+ EK+L LRKI K S K I+ +S+
Sbjct: 89 SKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKI--ATKEKSSKAISDISF 138
>At5g62100.1 68418.m07794 BAG domain-containing protein similar to
BAG domain containing proteins (At5g07220, At5g52060)
Length = 296
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 499 SNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEITIMSY 654
S MF D+S + I +P+ EK+L LRKI K S K I+ +S+
Sbjct: 89 SKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKI--ATKEKSSKAISDISF 138
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 340 VSQKIHANNELKDVKK--VVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNM 507
+S K N + K +K NT+ +R+E+ L + +L +++ V+D TE SN+
Sbjct: 782 LSDKQERNRKRKRTQKKQTDNTVLDTEDRSESLPLGSLKDLSKVKRRVIDPPTEGSNL 839
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 349 KIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSAC 528
K++ NN+ K VKK+ N++T N++ +E + + DST S+ SD +
Sbjct: 904 KMNVNNKEKAVKKISNSVTA--NKSTTNFFKDAEE-DESKTTTSDSTKAPSDSSSDNDSD 960
Query: 529 QSYCMHI 549
+ MH+
Sbjct: 961 VTSSMHM 967
>At1g08280.1 68414.m00914 glycosyl transferase family 29 protein /
sialyltransferase family protein contains Pfam profile:
PF00777 sialyltransferase (Glycosyltransferase family
29)
Length = 398
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 463 LRCSVL-DSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHK 633
L C+V+ +S T ++ + D+ + + ++ R EKK+G I F N N H+
Sbjct: 175 LSCAVVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVGSKTNISFINSNILHQ 232
>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 292 LATVFVIVLLSYLIPDVSQKIHANNE 369
L +V + L +L+PD +K+HAN E
Sbjct: 6 LVSVLFLFSLLFLLPDQGRKLHANAE 31
>At3g18485.1 68416.m02349 hypothetical protein
Length = 386
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 500 EVSVVLSSTEHLRRQSSSVADKQA 429
+V VVLS+ EHL + +ADK+A
Sbjct: 279 QVMVVLSTPEHLPESPNCIADKRA 302
>At2g34930.1 68415.m04288 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
pimpinellifolium] gi|1184075|gb|AAC15779
Length = 905
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 13 LTSSAVFVLTFNIKSKLRSQFKGHFPKCW 99
+ SS V I S ++ F G FPKCW
Sbjct: 607 IPSSLCEVSGLQILSLRKNHFSGSFPKCW 635
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,928
Number of Sequences: 28952
Number of extensions: 282659
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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