Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i23
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.41 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.8  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +2

Query: 146  DRNTSALVVKSPRRKFYGLFQIGSEWCKE-GRKGGKCDIPCEALLDEDIKDDGVCAIKIF 322
            +R   ALV+  P    +G F++ S +     R+  K + P +  + +D  D        F
Sbjct: 768  ERLGRALVINIPWA-VWGFFKLISPFIDPITREKLKFNEPLDRYVPKDQLDSNFGGSLHF 826

Query: 323  EQEGFKYWPKWEVRCKGQTLPDIEK 397
            E    KYWP+    CK + L  +EK
Sbjct: 827  EYHHEKYWPQLVELCKSRRLGILEK 851


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = +2

Query: 224 CKEGRKGGKCDIPCEALLDEDIKDDGVCAI------KIFEQEGFK-YWPKWEVRCKGQTL 382
           C   +KG KC       LD     +  C+I      K+  ++  K + PK    C G+  
Sbjct: 61  CNSRKKGSKCSTSSTTDLDSSSASNSSCSIPSSISEKLLPRDNVKTHCPKRSASCCGKK- 119

Query: 383 PDI 391
           PD+
Sbjct: 120 PDV 122


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  HVVYTTKH*LSIRFTINANNFWYYCSTNNNIFYLNYRGVFN 132
           ++++T    L      NAN  WYY   N  +F L+   V+N
Sbjct: 411 NIIFTNPDMLHQTILPNANR-WYYFFKNLKLFVLDEAHVYN 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,170
Number of Sequences: 5004
Number of extensions: 41959
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)