Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i23
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1179 - 35161229-35162368                                         30   1.3  
03_02_0836 - 11637618-11637962                                         30   1.7  
04_01_0377 - 4970034-4970687                                           27   9.1  
01_05_0488 - 22647196-22647561,22647847-22647999,22648716-226496...    27   9.1  

>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 395 KCPDWQLPPSRASPPRDKRYLKSDNSYKL 481
           KC D Q PP + SPPR  R      S KL
Sbjct: 95  KCSDTQFPPLQLSPPRKSRRRHRRRSVKL 123


>03_02_0836 - 11637618-11637962
          Length = 114

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 297 MGCVQSRYSNRKASSIGLNGRS-GAKAKLCPTLKSVQTGSY 416
           +GC++  +SN   SS G  GR+ G  A+ C    +   GS+
Sbjct: 32  LGCIRKSWSNDSLSSYGGGGRAGGGGAQACVCAPTTHPGSF 72


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 194 YGLFQIGSEWCKEGRKGGKC--DIPCEALLDEDIKDDGVC 307
           YG    GSE+C  G + G C  DI C    + ++  + +C
Sbjct: 82  YGYCGFGSEYCGSGCQNGPCRADIKCGRNANGELCPNNMC 121


>01_05_0488 -
           22647196-22647561,22647847-22647999,22648716-22649663,
           22649783-22649830
          Length = 504

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 278 RVTLRKECRIYHPCDLLCTIHFL 210
           R+T    CRI+  CDLL T++ L
Sbjct: 349 RLTTLSLCRIFDECDLLWTLYLL 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,796
Number of Sequences: 37544
Number of extensions: 281667
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)