Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i23
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.0  
SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 25   6.3  
SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015)                 25   6.3  
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              27   9.3  
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        27   9.3  

>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 140 GSDRNTSALVVKSPRRKFYGLFQIGSEWCKEGRKGGKCDIPCEALLDEDIK 292
           GS  N   L+V+  + + + L  +   W KEG   G+ DIP   L  +D K
Sbjct: 309 GSKINHLRLLVRELKSEIH-LLTLSETWIKEGASDGEFDIPGYRLFRKDRK 358


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 252 ATFLAKRYSTKT*KMMGCVQSRYSNRK 332
           A FLA+ ++ K  +M GC  +R++NRK
Sbjct: 852 APFLARLHNKKKGRMAGCWAARHNNRK 878


>SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 412

 Score = 24.6 bits (51), Expect(2) = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 461 ILGSACHAADWRGSVVAASLDTFQCRAEFGLC 366
           + GS  HA DW    V +  D F+      LC
Sbjct: 152 VQGSRIHAHDWFAKCVGSRGDAFRSYRRHKLC 183



 Score = 21.8 bits (44), Expect(2) = 6.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 296 HLLCLRRVTLRKECRIYHP 240
           H LCL+ +   +ECR+  P
Sbjct: 180 HKLCLQWLRHAQECRVNDP 198


>SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015)
          Length = 356

 Score = 24.6 bits (51), Expect(2) = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 461 ILGSACHAADWRGSVVAASLDTFQCRAEFGLC 366
           + GS  HA DW    V +  D F+      LC
Sbjct: 152 VQGSRIHAHDWFAKCVGSRGDAFRSYRRHKLC 183



 Score = 21.8 bits (44), Expect(2) = 6.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 296 HLLCLRRVTLRKECRIYHP 240
           H LCL+ +   +ECR+  P
Sbjct: 180 HKLCLQWLRHAQECRVNDP 198


>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 191 FYGLFQIGSEW-CKEGRKGGKCDIPCEALLD---EDIKDDGVCAIKIFEQEGFKYWPKWE 358
           FYGLF+  +E  CK  R G   DI  +A  +   +  K     A+KI+ QE F   P+W+
Sbjct: 38  FYGLFKQATEGPCKTSRPGF-WDIVGKAKWESWHQHGKMPQEKAMKIYVQELFSLDPEWD 96

Query: 359 VR 364
           ++
Sbjct: 97  IK 98


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +2

Query: 248 KCDIPCEALLDEDIKD----DGVCAIKIFEQEGF--KYWPKWEVRCKGQTLPDIEKCPDW 409
           +C+ P + L D+DI+D     G+   + F  + F  +  PKW    + +  P + +  D 
Sbjct: 90  ECEHPVDPLSDDDIQDIPLHSGLVPHEDFSPQLFSKEASPKWPTSDQKRGEPRLGQGTDQ 149

Query: 410 QLPPSRASPP 439
           QL   R S P
Sbjct: 150 QLTERRTSTP 159


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 404 DWQLPPSRASPPRDK 448
           DW+ P +R SPP DK
Sbjct: 138 DWEYPGARGSPPEDK 152


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 404 DWQLPPSRASPPRDK 448
           DW+ P +R SPP DK
Sbjct: 62  DWEYPGARGSPPEDK 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,176
Number of Sequences: 59808
Number of extensions: 332557
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)