Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i23
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    30   1.1  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    29   3.3  
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    28   5.7  

>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 416 PPSRASPPRDKRYLKSDNSYKLFRG 490
           PP R SPP+ KRY + DN Y   RG
Sbjct: 104 PPQRRSPPQ-KRYRRDDNGYDGRRG 127


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 197  GLFQIGSEWCKEGRKGGKCDIPCEALLDEDI 289
            G+ Q+ SE  K GR+G   DIP +   DE+I
Sbjct: 1008 GIPQLRSEDSKNGRRGSIVDIPDDCSSDENI 1038


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +2

Query: 332 GFKYWPKWEVRCKGQTLPDIEKCPDWQLPPSRASPPRDKRYLKSDNSYKLF 484
           GF Y P      + + LP +E  P W  PP     P  +  +   + Y  F
Sbjct: 368 GFGYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQF 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,330
Number of Sequences: 28952
Number of extensions: 223851
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)